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CDS information : Dynm_00070


close this sectionLocation

Organism
StrainATCC 53710 (=NBRC 15963)
Entry nameDynemicin
Contig
Start / Stop / Direction14,521 / 14,054 / - [in whole cluster]
14,521 / 14,054 / - [in contig]
Locationcomplement(14054..14521) [in whole cluster]
complement(14054..14521) [in contig]
TypeCDS
Length468 bp (155 aa)
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close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)unkown protein
Gene
Gene (GenBank)
EC number
Keyword
Note
  • This ORF is not involved in dynemicin A biosynthesis.
Note (GenBank)
  • ORF8
Reference
ACC
PmId
[18328078] The biosynthetic genes encoding for the production of the dynemicin enediyne core in Micromonospora chersina ATCC53710. (FEMS Microbiol Lett. , 2008)

close this sectionSequence

selected fasta
>hypothetical protein [unkown protein]
MQRLIRRIGIAAAVAAVLVGVAGTGAQAAAVNPYTPEALCGPGFVAVDQDPIHDTATGAR
LGTVHLLRNPLTGYGCTVTLKSAYVGTLTGTRVYLDPEWTAFGVDDGSRRYAAGPVHRYI
GAGCAIWGGSMTDPAGAVHQHDRANPAIGGAVTCF
selected fasta
>hypothetical protein [unkown protein]
ATGCAGCGGCTCATTCGACGAATCGGGATCGCGGCGGCCGTGGCGGCCGTCCTCGTCGGG
GTGGCGGGGACCGGCGCGCAGGCGGCGGCGGTCAACCCGTACACCCCGGAGGCGCTCTGC
GGCCCGGGCTTCGTCGCCGTCGACCAGGACCCGATCCACGACACCGCCACCGGCGCGCGG
CTCGGCACCGTCCACCTGCTGCGCAACCCCCTCACCGGGTACGGCTGCACGGTCACCCTC
AAGTCCGCGTACGTCGGGACGCTCACCGGGACCCGCGTCTACCTGGATCCGGAATGGACC
GCCTTCGGCGTCGACGACGGCAGCCGGCGCTACGCGGCCGGCCCGGTCCACCGCTACATC
GGCGCGGGTTGTGCCATCTGGGGCGGGTCGATGACCGACCCCGCCGGCGCCGTCCACCAG
CACGACCGCGCGAACCCGGCCATCGGCGGGGCGGTCACCTGCTTCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro No significant hit
SignalP
 [1-28]  0.767 Signal
Bacteria, Gram-negative   
 [1-28]  0.664 Signal
Eukaryota   
 [1-28]  0.739 Signal
Bacteria, Gram-positive   
TMHMM
 [9-31]  Transmembrane (i-o)
Transmembrane 1