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CDS information : Dynm_00250


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Organism
StrainATCC 53710 (=NBRC 15963)
Entry nameDynemicin
Contig
Start / Stop / Direction38,660 / 39,226 / + [in whole cluster]
38,660 / 39,226 / + [in contig]
Location38660..39226 [in whole cluster]
38660..39226 [in contig]
TypeCDS
Length567 bp (188 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)DynU21
GenedynU21
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • hypothetical protein; CalU21-like protein
Reference
ACC
PmId
[18328078] The biosynthetic genes encoding for the production of the dynemicin enediyne core in Micromonospora chersina ATCC53710. (FEMS Microbiol Lett. , 2008)

close this sectionSequence

selected fasta
>hypothetical protein [DynU21]
MTDRPHTDRNGLLTNLNGRHHRTAVMLFMLVVLGHWAEHIAQAVQIWGLGWPVPKARGVL
GLPFPWLISSEWLHYGYALVMLVGLWALRPGFTGRARTWWTVALAIQFWHHIEHLLLLVQ
AQTGAHLAGRPVPTSVLQFWFPRVQLHLFYNAVVFLPMVVAMYHYLRDSGRGATTTAPDR
AAPHRVSA
selected fasta
>hypothetical protein [DynU21]
GTGACCGACCGACCGCACACCGACCGCAACGGGCTCCTGACCAACCTGAACGGCCGTCAC
CACCGGACCGCCGTGATGCTGTTCATGCTTGTGGTCCTCGGGCACTGGGCCGAGCACATC
GCCCAGGCCGTGCAGATCTGGGGCCTCGGCTGGCCCGTGCCGAAGGCCCGCGGCGTGCTG
GGCCTGCCGTTCCCGTGGCTGATCAGCTCGGAGTGGCTGCACTACGGCTACGCGCTCGTC
ATGCTCGTCGGCCTCTGGGCGCTGCGCCCCGGCTTCACGGGCCGGGCCCGCACCTGGTGG
ACGGTGGCGCTGGCCATCCAGTTCTGGCACCACATCGAGCACCTGCTGCTGCTGGTCCAG
GCGCAGACCGGCGCGCACCTGGCCGGCCGGCCGGTGCCGACAAGCGTGCTCCAGTTCTGG
TTCCCCCGCGTCCAGCTGCACCTGTTCTACAACGCGGTGGTCTTCCTGCCGATGGTCGTG
GCCATGTACCACTACCTGCGGGACTCCGGCCGCGGTGCGACCACCACCGCGCCGGACCGG
GCCGCACCGCACCGGGTGTCGGCATGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro No significant hit
SignalP
 [1-43]  0.48 Signal
Eukaryota   
TMHMM
 [24-46]  Transmembrane (i-o) [66-88]  Transmembrane (o-i) [147-166]  Transmembrane (i-o)
Transmembrane 3