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CDS information : Dynm_00390


close this sectionLocation

Organism
StrainATCC 53710 (=NBRC 15963)
Entry nameDynemicin
Contig
Start / Stop / Direction53,635 / 52,523 / - [in whole cluster]
53,635 / 52,523 / - [in contig]
Locationcomplement(52523..53635) [in whole cluster]
complement(52523..53635) [in contig]
TypeCDS
Length1,113 bp (370 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)putative methyltransferase
GenedynA5
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • ORF28
Reference
ACC
PmId
[18328078] The biosynthetic genes encoding for the production of the dynemicin enediyne core in Micromonospora chersina ATCC53710. (FEMS Microbiol Lett. , 2008)

close this sectionSequence

selected fasta
>hypothetical protein [putative methyltransferase]
MNQPTLTSEAQQPPGPPGQLDMSALMAFMQRFVGDVSAAGVVVMCALGSRLGLFADLARS
GPATAGELARRTGNHERYVREWALALASAAYLTRDAEGRYALPPGPAAALGDENGPFYMG
DMAQLVPALSAVLDGVIEGFRTGSGLHPEEYPAELFETIWHKDANRLGKVLVPQWVVAVD
GLTEQLTVGGRVAQVHCGDGRALILLAQAFPKLELVGYDPVEINVRRARAEAAAAGVADR
IRFSTADPAEDLDGGLALVLAIDVLHEAPDPAALLRRIHDSLQSHGVFLLLATNGEDVPL
AGAGPVSSMLYAISTLQHVPQGLAAGAADPAGLMGLPPALLHRLCEEAGFTTVEKLMEPS
PFNTLYELRA
selected fasta
>hypothetical protein [putative methyltransferase]
GTGAACCAGCCCACCCTGACCTCCGAAGCCCAGCAGCCGCCCGGCCCGCCGGGGCAGTTG
GACATGTCCGCGCTGATGGCCTTCATGCAGCGTTTCGTCGGCGACGTGTCGGCGGCCGGC
GTGGTCGTCATGTGCGCCCTCGGCAGCCGGCTCGGCCTCTTCGCCGACCTGGCCCGCTCG
GGGCCGGCCACCGCCGGGGAACTCGCCCGCCGCACCGGCAACCACGAGCGGTACGTCCGC
GAGTGGGCGCTGGCCCTGGCCAGCGCCGCCTACCTCACCCGGGACGCCGAGGGCCGGTAC
GCCCTGCCGCCCGGCCCGGCCGCCGCCCTCGGTGACGAGAACGGGCCGTTCTACATGGGG
GACATGGCCCAGCTCGTGCCCGCGCTGTCGGCGGTGCTGGACGGTGTGATCGAGGGCTTC
CGCACCGGCTCCGGGCTGCACCCCGAGGAGTACCCGGCGGAGCTGTTCGAGACCATCTGG
CACAAGGACGCCAACCGCCTCGGCAAGGTGCTCGTCCCGCAGTGGGTGGTCGCGGTGGAC
GGGCTCACCGAGCAGCTCACCGTCGGCGGGCGGGTGGCGCAGGTGCACTGCGGCGACGGC
CGGGCGCTGATCCTGCTCGCCCAGGCCTTCCCGAAGCTCGAACTCGTCGGATACGACCCA
GTCGAGATCAACGTCCGCCGGGCCCGCGCCGAGGCGGCGGCGGCCGGCGTGGCGGACCGG
ATCCGGTTCAGCACCGCCGACCCGGCCGAGGACCTCGACGGCGGGCTGGCGCTCGTGCTG
GCGATCGACGTGCTGCACGAGGCGCCCGACCCGGCCGCGCTGCTGCGCCGCATCCACGAC
TCCCTCCAGTCGCACGGGGTGTTCCTGCTGCTGGCCACCAACGGCGAGGACGTGCCGCTG
GCCGGCGCCGGCCCGGTGAGCAGCATGCTCTACGCGATCAGCACCCTCCAGCACGTGCCG
CAGGGCCTCGCGGCCGGCGCCGCCGACCCGGCCGGACTGATGGGGCTGCCGCCGGCGCTG
CTGCACCGGCTGTGCGAGGAGGCCGGCTTCACGACCGTCGAGAAGCTGATGGAGCCCAGC
CCGTTCAACACCCTCTACGAGCTCCGGGCCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding (Domain)
 [50-103]  8.20000000000001e-10 G3DSA:1.10.10.10
G3DSA:1.10.10.10   Wing_hlx_DNA_bd
SignalP No significant hit
TMHMM No significant hit