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CDS information : Dynm_00520


close this sectionLocation

Organism
StrainATCC 53710 (=NBRC 15963)
Entry nameDynemicin
Contig
Start / Stop / Direction65,890 / 64,871 / - [in whole cluster]
65,890 / 64,871 / - [in contig]
Locationcomplement(64871..65890) [in whole cluster]
complement(64871..65890) [in contig]
TypeCDS
Length1,020 bp (339 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)putative transmembrane transport protein
GenedynT9
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • ORF37
Reference
ACC
PmId
[18328078] The biosynthetic genes encoding for the production of the dynemicin enediyne core in Micromonospora chersina ATCC53710. (FEMS Microbiol Lett. , 2008)

close this sectionSequence

selected fasta
>hypothetical protein [putative transmembrane transport protein]
MIWTTWRQFRGQALVGVIGLALIAAYFLYLGFDIRDSYDNYRAQCASLADCGPQLSQFSA
DYENTLLYLAALLGLIPGLLGMFWGAPLVARELEAGTQRLVWSQSVTRRHWLAVKLALVG
LASIVVAGAASLLLTWAASPVDQVADNRFSTILFGARNIAPIAYAAFAFVLGTIIGLMVR
RTVPAMALTILAFVVFQFLVPNVIRPHFLPAEHLTKPMTVQAINQARSLGSITGAPVVKG
LTVPDAWVTDVSELLTKTGEPLDEGIFNECFTNAPETGTAEGPYGDTAVCLAKHDVHVEI
AYQPTSRYWSFQWLESAFYLVLAGLLAGFGFWRLQRRPS
selected fasta
>hypothetical protein [putative transmembrane transport protein]
GTGATCTGGACGACCTGGCGGCAGTTCCGCGGGCAGGCCCTGGTCGGCGTCATCGGCCTG
GCCCTGATCGCCGCGTACTTCCTCTACCTCGGGTTCGACATCCGGGACTCCTACGACAAC
TACCGGGCGCAGTGCGCCAGCCTGGCCGACTGCGGCCCGCAGCTGAGCCAGTTCAGCGCC
GACTACGAGAACACCCTGCTCTACCTGGCCGCGTTGCTCGGGCTCATCCCGGGCCTGCTC
GGCATGTTCTGGGGCGCGCCCCTGGTGGCGCGGGAGCTGGAGGCCGGCACCCAGCGGCTG
GTCTGGAGCCAGAGCGTGACCCGCCGGCACTGGCTGGCGGTCAAGCTGGCTCTGGTGGGG
CTGGCCAGCATAGTGGTGGCGGGCGCGGCCAGCCTGCTGCTGACCTGGGCGGCCAGCCCC
GTGGACCAGGTGGCCGACAACCGGTTCAGCACGATCCTGTTCGGCGCCCGGAACATCGCG
CCGATCGCGTACGCGGCGTTCGCCTTCGTGCTCGGGACGATCATCGGGCTCATGGTGCGT
CGGACCGTGCCGGCCATGGCGCTGACCATCCTGGCCTTCGTGGTCTTCCAGTTCCTGGTG
CCCAACGTGATCCGGCCGCACTTCCTGCCGGCGGAGCACCTCACCAAGCCGATGACCGTG
CAGGCCATCAACCAGGCCCGCAGCCTGGGCAGCATCACCGGAGCCCCGGTGGTCAAGGGC
CTGACCGTGCCGGACGCCTGGGTCACCGACGTCAGCGAGCTGCTCACGAAGACGGGTGAG
CCGCTGGACGAGGGGATCTTCAACGAGTGCTTCACCAACGCCCCGGAGACCGGCACGGCC
GAGGGCCCGTACGGGGACACCGCCGTCTGTCTGGCGAAGCACGACGTGCACGTGGAGATC
GCGTACCAGCCGACCAGCCGGTACTGGTCGTTCCAGTGGCTGGAGTCGGCGTTCTACCTG
GTGCTGGCCGGGCTGCTGGCCGGCTTCGGGTTCTGGCGGCTCCAGCGCCGCCCGAGCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
No significant hit
SignalP No significant hit
TMHMM
 [13-32]  Transmembrane (i-o) [67-89]  Transmembrane (o-i) [116-138]  Transmembrane (i-o) [153-175]  Transmembrane (o-i) [182-204]  Transmembrane (i-o) [310-332]  Transmembrane (o-i)
Transmembrane 6