close all open/close all

CDS information : Epoth_00050


close this sectionLocation

Organism
StrainSo ce90
Entry nameEpothilone
Contig
Start / Stop / Direction6,226 / 6,675 / + [in whole cluster]
6,226 / 6,675 / + [in contig]
Location6226..6675 [in whole cluster]
6226..6675 [in contig]
TypeCDS
Length450 bp (149 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)unknown
Gene
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • ORF5
Reference
ACC
PmId
[10662695] The biosynthetic gene cluster for the microtubule-stabilizing agents epothilones A and B from Sorangium cellulosum So ce90. (Chem Biol. , 2000)

close this sectionSequence

selected fasta
>hypothetical protein [unknown]
MKHVDTGRRFGRRIGHTLGLLASMALAGCGGPSEKTVQGTRLAPGADARVTADVDPDAAT
TRLAVDVVHLSPPERLEAGSERFVVWQRPSPESPWRRVGVLDYNADSRRGKLAETTVPYA
NFELLITAEKQSSPQSPSSAAVIGPTSVG
selected fasta
>hypothetical protein [unknown]
ATGAAACACGTCGACACGGGCCGACGATTCGGCCGCCGGATAGGGCACACGCTCGGTCTT
CTCGCGAGCATGGCGCTCGCCGGCTGCGGCGGTCCGAGCGAGAAAACCGTGCAGGGCACG
CGGCTCGCGCCCGGCGCCGATGCGCGCGTCACCGCCGACGTCGACCCCGACGCCGCGACC
ACGCGGCTGGCGGTGGACGTCGTTCACCTCTCGCCGCCCGAGCGGCTCGAGGCCGGCAGC
GAGCGGTTCGTCGTCTGGCAGCGTCCGAGCCCCGAGTCCCCGTGGCGACGGGTCGGAGTG
CTCGACTACAATGCTGACAGCCGAAGAGGCAAGCTGGCCGAGACGACCGTGCCGTATGCC
AACTTCGAGCTGCTCATCACCGCCGAGAAGCAGAGCAGCCCTCAGTCGCCATCGTCTGCC
GCCGTCATCGGGCCGACGTCTGTCGGGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
No significant hit
SignalP
 [1-30]  0.825 Signal
Eukaryota   
 [1-48]  0.886 Signal
Bacteria, Gram-positive   
 [1-27]  0.632 Signal
Bacteria, Gram-negative   
TMHMM No significant hit