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CDS information : Griseu_00020


close this sectionLocation

Organism
StrainK-63
Entry nameGriseusin
Contig
Start / Stop / Direction1,455 / 2,693 / + [in whole cluster]
1,455 / 2,693 / + [in contig]
Location1455..2693 [in whole cluster]
1455..2693 [in contig]
TypeCDS
Length1,239 bp (412 aa)
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close this sectionAnnotation

Category1.1 PKS
Productpolyketide synthase chain length factor subunit
Product (GenBank)putative chain length determination factor
Gene
Gene (GenBank)
EC number
Keyword
  • type II PKS
Note
Note (GenBank)
  • ORF2
Reference
ACC
PmId
[8169211] Cloning, sequencing, and analysis of the griseusin polyketide synthase gene cluster from Streptomyces griseus. (J Bacteriol. , 1994)
Related Reference
ACC
Q54174
NITE
Urd_00130
PmId
[7592377] Cloning and characterization of a polyketide synthase gene from Streptomyces fradiae Tu2717, which carries the genes for biosynthesis of the angucycline antibiotic urdamycin A and a gene probably involved in its oxygenation. (J Bacteriol. , 1995)

close this sectionPKS/NRPS Module

CLF13..368

close this sectionSequence

selected fasta
>polyketide synthase chain length factor subunit [putative chain length determination factor]
MSAPGGGDRGRTLITGMGLATPHGVDVEDFWAATRVGKNAIGPVTRFDASGYPARLAGEI
RGFSAADHLPGRLVAQTDRVTQLALVAADRAFRDAGVAPGDLPANGMGVVTAAGSGGFEF
GERELRKLWSLGANHVSAYQSFAWFPTANTGQIAIRSDSRGPNGVVVGDQAGGLDALGQA
RRLIRRGTGLVAAGGFEASLTPLGWTARLSTGLMSTSDDPDRAYLPFHPAARGYVPGEGG
ALLILEDERSALARGAATAHAELAGYSATLDPRPGSGREPGLRRAIELALADAGVAPAEV
DVVFADAAGSPEPDAVEVAAVAGVFGPRAVPVTAPKTMIGRLQAGGAPVDVVTAVLAIRE
GLIPPTADAESATARELDLVVGRPRTASVGTALVLARGHGGFNSAVVLRAVD
selected fasta
>polyketide synthase chain length factor subunit [putative chain length determination factor]
GTGAGCGCCCCGGGCGGCGGCGACCGCGGCCGCACGTTGATCACCGGCATGGGACTGGCC
ACACCGCACGGCGTCGACGTGGAGGATTTCTGGGCGGCGACACGGGTCGGCAAGAACGCC
ATCGGACCGGTCACCCGGTTCGACGCGTCCGGCTACCCGGCGCGGCTGGCGGGAGAGATC
CGCGGATTCTCGGCCGCGGACCATCTGCCGGGCCGGCTGGTGGCGCAGACCGACCGGGTG
ACCCAACTGGCCCTGGTCGCCGCGGACCGCGCGTTCCGGGACGCCGGGGTGGCTCCGGGC
GACCTTCCCGCGAACGGGATGGGCGTGGTCACGGCGGCCGGTTCCGGCGGTTTCGAGTTC
GGCGAGCGGGAGTTGCGCAAGCTCTGGAGCCTCGGCGCGAACCACGTGAGCGCCTACCAG
TCGTTCGCCTGGTTCCCGACCGCCAACACCGGCCAGATCGCGATCCGCAGCGACAGCCGC
GGACCGAACGGCGTGGTCGTCGGCGACCAGGCCGGCGGCCTCGACGCGCTCGGACAGGCC
CGGCGGCTCATCCGCCGCGGCACCGGACTGGTCGCCGCGGGCGGCTTCGAGGCGTCGCTG
ACACCGCTCGGCTGGACGGCACGGCTGTCGACCGGACTGATGTCGACCAGCGACGATCCC
GACCGCGCCTATCTGCCGTTCCATCCGGCGGCGCGCGGCTACGTTCCCGGCGAGGGCGGC
GCACTGCTGATCCTGGAGGACGAGCGCAGCGCCCTGGCCCGCGGCGCGGCCACCGCCCAC
GCCGAACTGGCCGGGTACAGCGCGACGCTGGATCCGCGCCCCGGCAGCGGGCGCGAGCCC
GGTCTGCGGCGCGCCATCGAACTGGCGCTGGCGGACGCCGGCGTCGCACCGGCCGAGGTG
GACGTCGTCTTCGCCGACGCCGCCGGCTCACCGGAGCCGGACGCGGTGGAAGTGGCGGCC
GTGGCCGGTGTGTTCGGACCGCGCGCGGTGCCGGTCACCGCGCCGAAGACCATGATCGGC
CGGCTCCAGGCGGGCGGCGCCCCGGTGGACGTGGTGACCGCCGTCCTCGCCATCCGCGAA
GGCCTGATCCCGCCGACCGCCGACGCGGAGTCCGCCACGGCCCGCGAGCTGGACCTGGTC
GTCGGACGGCCCCGGACCGCCTCGGTCGGCACCGCGCTGGTGCTCGCGCGAGGGCACGGC
GGATTCAACTCGGCCGTCGTGCTGCGGGCCGTCGACTGA
CLF13..368
CLF37..1104

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR014030 Beta-ketoacyl synthase, N-terminal (Domain)
 [13-248]  2.50000000000001e-52 PF00109
PF00109   ketoacyl-synt
IPR014031 Beta-ketoacyl synthase, C-terminal (Domain)
 [260-368]  7.5e-26 PF02801
PF02801   Ketoacyl-synt_C
IPR016038 Thiolase-like, subgroup (Domain)
 [11-264]  3.2e-51 G3DSA:3.40.47.10 [278-411]  6.6999999999999e-36 G3DSA:3.40.47.10
G3DSA:3.40.47.10   Thiolase-like_subgr
IPR016039 Thiolase-like (Domain)
 [9-256]  9.80000272130214e-59 SSF53901 [219-411]  1.60000240695997e-43 SSF53901
SSF53901   Thiolase-like
SignalP No significant hit
TMHMM No significant hit