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CDS information : Kirro_00400


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Organism
StrainTü365
Entry nameKirromycin
Contig
Start / Stop / Direction98,383 / 98,024 / - [in whole cluster]
98,383 / 98,024 / - [in contig]
Locationcomplement(98024..98383) [in whole cluster]
complement(98024..98383) [in contig]
TypeCDS
Length360 bp (119 aa)
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close this sectionAnnotation

Category4.1 transcriptional regulator
Productputative TetR family transcriptional regulator(fragment)
Product (GenBank)putative TetR family transcriptional regulator
Gene
Gene (GenBank)kirRII
EC number
Keyword
Note
Note (GenBank)
Reference
ACC
PmId
[18291322] Molecular analysis of the kirromycin biosynthetic gene cluster revealed beta-alanine as precursor of the pyridone moiety. (Chem Biol. , 2008)
Family/Domain
FD
IPR001647

close this sectionSequence

selected fasta
>putative TetR family transcriptional regulator(fragment) [putative TetR family transcriptional regulator]
MRYCICVLGRRPIIGKRLTRQESREITRQDLLQAAADLFAECGVNGTSVEQIVERAGYSR
GAFYGNFDGKQQLILALLEQRTERELAEVQALSADAGSFEETIEHLRNWHRGRDKNFAS
selected fasta
>putative TetR family transcriptional regulator(fragment) [putative TetR family transcriptional regulator]
ATGCGGTACTGTATCTGTGTTCTCGGAAGGAGGCCCATCATCGGCAAACGACTCACCCGG
CAGGAGAGCCGGGAAATCACGCGCCAGGACCTGCTGCAGGCAGCTGCCGACCTGTTCGCC
GAATGCGGTGTCAACGGCACCTCGGTCGAACAGATCGTGGAACGCGCCGGGTACTCCCGG
GGCGCCTTCTACGGCAACTTCGACGGCAAGCAACAGCTGATCCTGGCTCTCCTGGAGCAG
CGCACCGAGCGTGAACTGGCCGAGGTGCAGGCACTCAGCGCCGACGCCGGCTCGTTCGAG
GAGACGATCGAGCACCTGCGCAACTGGCATCGCGGGCGGGACAAGAACTTCGCGAGCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR001647 DNA-binding HTH domain, TetR-type (Domain)
 [31-44]  1.9000006847787e-08 PR00455 [52-75]  1.9000006847787e-08 PR00455
PR00455   HTHTETR
 [31-77]  6.1e-16 PF00440
PF00440   TetR_N
 [25-85]  PS50977
PS50977   HTH_TETR_2
IPR009057 Homeodomain-like (Domain)
 [15-103]  3.30000526807186e-20 SSF46689
SSF46689   Homeodomain_like
IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal (Domain)
 [19-105]  1.1e-24 G3DSA:1.10.357.10
G3DSA:1.10.357.10   TetR_C
SignalP No significant hit
TMHMM No significant hit