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CDS information : MUP_00290


close this sectionLocation

Organism
StrainAgy99
Entry nameMycolactone
Contig
Start / Stop / Direction27,321 / 26,980 / - [in whole cluster]
27,321 / 26,980 / - [in contig]
Locationcomplement(26980..27321) [in whole cluster]
complement(26980..27321) [in contig]
TypeCDS
Length342 bp (113 aa)
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close this sectionAnnotation

Category
Product
Product (GenBank)probable transposase for the insertion element IS2404 (fragment)
Gene
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • MUP029c, -, len: 113 aa. Probable IS2404 transposase fragment, highly similar to the C-terminus of O07439 Putative transposase from Mycobacterium ulcerans (327 aa), fasta scores: opt: 496, E(): 3.7e-31, (94.805% identity in 77 aa overlap). Note that this homology extends across the upstream TAG stop codon into the upstream MUP030, suggesting a possible readthrough of the previous stop codon. No sequence errors have been identified and this insertion sequence containing the internal stop codon is repeated at two other locations on the plasmid, MUP047 + MUP048 and MUP062 + MUP063.

close this sectionSequence

selected fasta
>[probable transposase for the insertion element IS2404 (fragment)]
MTATDQHSVEVVYAICSLPFEHARPTAIMTWMRQHCGIENSLHWIRDVTFDEDRHRAHTG
NGAQVLATLRNTAINLHRLNGADNIAEACRITALTANRRLDLLNPQFPSSQAC
selected fasta
>[probable transposase for the insertion element IS2404 (fragment)]
ATCACCGCCACCGACCAGCACAGCGTGGAGGTGGTCTATGCCATCTGCAGCCTGCCGTTC
GAGCACGCCCGCCCTACCGCGATCATGACCTGGATGCGTCAACACTGCGGAATCGAGAAC
AGCCTGCACTGGATACGCGACGTCACCTTCGACGAAGACCGTCACAGGGCACATACCGGA
AACGGCGCACAGGTCCTAGCAACGCTACGCAACACCGCGATCAATCTGCACCGCCTCAAC
GGCGCCGACAACATCGCCGAAGCCTGCCGGATCACCGCTTTGACCGCCAACCGCCGCCTA
GACCTCCTCAACCCACAATTCCCCAGCTCACAAGCCTGCTAA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR002559 Transposase, IS4-like (Domain)
 [5-76]  5.29999999999999e-10 PF01609
PF01609   DDE_Tnp_1
SignalP No significant hit
TMHMM No significant hit