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Pimar_00100
CDS information : Pimar_00110
Location
| Organism | Streptomyces natalensis |
|---|---|
| Strain | ATCC 27448 (=NBRC 13367) |
| Entry name | Pimaricin |
| Contig | AJ278573 |
| Start / Stop / Direction | 54,813 / 56,693 / + [in whole cluster] 48,069 / 49,949 / + [in contig] |
| Location | 54813..56693 [in whole cluster] 48069..49949 [in contig] |
| Type | CDS |
| Length | 1,881 bp (626 aa) |
Annotation
| Category | 4.3 transport |
|---|---|
| Product | putative ABC transporter ATP-binding and permease protein |
| Product (GenBank) | PimB protein |
| Gene | |
| Gene (GenBank) | pimB |
| EC number | |
| Keyword | |
| Note | |
| Note (GenBank) | |
| Reference |
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| Related Reference |
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Sequence
>putative ABC transporter ATP-binding and permease protein [PimB protein] MVSTDSSSHEWRGPARRTLELLRPHRAPVTVAVALGIGGVVLNASGPMLLGRATDLIFDG IRHTHGSRGIDFDAIARVLLTALALFAAASLLTLLQGRLVTAVVQRVVFALRRSVEAKLA RLPLRYFDRHPAGEVLSRVTNDVDNLQQTLQQTLSQLITAAFSVLTMVVLMFALSPPLAL IMLACVPVSAVIAARISRRAQPRFTQQWSATGALSAHVEEVYTGHALVKGFGRREQAERV FDEHNDALYRAGARAQCVSGAIEPSMMFVSNLGYVVVAVVGALRVVSGALTIGDVQAFIL YSRQFSQPIVEVAGIAARLQSALASAKRVHDLLDADEQGPDPERPARLPQARGHVRFDKV GFRYSPDLPLIEDLCLTVEPGQTVAVVGPTGAGKTTLGNLLMRFYETDAGRILLDGTDIT TLTREDLRSHIGLVLQDAWLFSGTIAENIAYGRPDATREEIVAAARATCADRFIRTLPDG YDTVLDEESANVSAGEKQLITIARAFLARPSILLLDEATSSVDTRTEVLIQRAMHSLRAG RTSFVIAHRLSTIRDADLILVMEDGRIVERGTHDQLLAAEGAYARLHATAGPDATAGPDA TAGPDATAGPDATAAPRTSGISPSLS
>putative ABC transporter ATP-binding and permease protein [PimB protein] ATGGTCTCGACGGACAGCTCTAGCCACGAGTGGCGCGGCCCGGCCCGCCGCACGCTGGAA CTGCTGCGCCCGCACCGTGCCCCGGTGACCGTGGCGGTCGCCCTCGGCATCGGCGGCGTC GTCCTCAACGCGTCGGGTCCGATGCTCCTCGGCAGGGCCACGGACCTCATCTTCGACGGC ATCCGGCACACCCACGGATCCAGAGGCATCGACTTCGACGCGATCGCCCGTGTGCTGCTG ACGGCGCTCGCGCTCTTCGCCGCCGCCTCCCTCCTCACCCTCCTCCAGGGGCGGCTGGTC ACGGCCGTCGTCCAGCGTGTGGTCTTCGCACTGCGCCGTTCCGTGGAGGCCAAGCTCGCC CGCCTGCCGCTGCGGTACTTCGACCGCCACCCGGCGGGGGAGGTGCTCAGCCGGGTGACC AATGACGTCGACAACCTCCAGCAGACCCTCCAGCAGACCCTCAGCCAGCTGATCACGGCG GCGTTCTCCGTGCTGACCATGGTGGTGCTGATGTTCGCCCTCTCGCCGCCGCTGGCCCTG ATCATGCTGGCCTGCGTACCGGTGTCGGCCGTGATCGCGGCCCGGATCAGCCGGCGCGCA CAGCCGCGGTTCACCCAGCAGTGGTCCGCGACCGGAGCGCTCAGCGCCCATGTCGAGGAG GTCTACACCGGACATGCGCTGGTCAAGGGCTTCGGGCGGCGCGAGCAGGCCGAGCGGGTC TTCGACGAGCACAACGACGCCCTGTACCGCGCCGGTGCGAGGGCCCAGTGCGTCTCCGGC GCCATCGAACCGTCGATGATGTTCGTCTCCAACCTCGGCTATGTCGTCGTGGCGGTCGTC GGCGCGCTGCGCGTGGTCTCCGGGGCCCTGACCATCGGCGACGTCCAGGCGTTCATCCTC TACTCCCGGCAGTTCAGTCAGCCGATCGTCGAGGTCGCCGGCATCGCCGCCCGCCTCCAG TCCGCCCTCGCCTCCGCGAAGCGGGTCCACGACCTCCTGGACGCCGACGAACAAGGCCCC GACCCCGAGCGGCCCGCACGCCTCCCACAGGCCCGTGGACACGTCCGGTTCGACAAGGTC GGTTTCCGCTACTCCCCCGACCTCCCCCTCATCGAGGACCTCTGCCTCACCGTCGAACCC GGACAGACCGTGGCGGTCGTCGGTCCGACCGGCGCGGGCAAGACCACGCTGGGCAACCTC CTCATGCGGTTCTACGAAACCGACGCGGGGCGCATCCTCCTGGACGGCACCGACATCACC ACCCTGACCCGCGAGGACCTGCGCTCCCATATCGGCCTGGTGCTCCAGGACGCCTGGCTG TTCTCCGGCACCATCGCCGAGAACATCGCCTACGGGCGCCCCGACGCGACGCGCGAGGAG ATCGTGGCCGCCGCCCGCGCCACCTGCGCCGACCGCTTCATCCGCACCCTGCCGGACGGC TACGACACCGTCCTGGACGAGGAGTCGGCCAACGTCAGCGCGGGCGAGAAGCAGCTCATC ACCATTGCCCGGGCCTTCCTGGCCCGGCCCTCGATCCTGCTCCTGGACGAGGCGACCAGC TCCGTCGACACCCGCACGGAAGTCCTCATCCAACGCGCGATGCACTCGCTGCGCGCGGGC CGCACCAGCTTCGTCATAGCCCACCGGCTGTCCACCATCCGCGATGCGGACCTCATCCTC GTCATGGAAGACGGCCGCATCGTCGAGCGCGGCACCCACGACCAGCTCCTGGCCGCCGAG GGGGCCTACGCCCGGCTGCATGCGACCGCGGGGCCCGATGCGACGGCGGGGCCCGATGCG ACGGCGGGGCCCGATGCGACGGCGGGGCCCGATGCGACGGCGGCGCCGCGTACCTCTGGC ATTTCCCCCAGTCTTTCCTGA
Feature
| BLASTP Database:UniProtKB:2010_04 |
|
|---|---|
| InterPro Database:interpro:26.0 |
IPR001140 ABC transporter, transmembrane domain (Domain)
IPR003439 ABC transporter-like (Domain)
IPR003593 ATPase, AAA+ type, core (Domain)
IPR011527 ABC transporter, transmembrane domain, type 1 (Domain)
IPR017871 ABC transporter, conserved site (Conserved_site)
IPR017940 ABC transporter integral membrane type 1 (Domain)
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| SignalP |  ![[1-1] Signal-anchor](/pks/img/M.gif "[1-1] Signal-anchor"){kind=small} |
| TMHMM | ![[31-53] Transmembrane (o-i)](/pks/img/G.gif "[31-53] Transmembrane (o-i)"){kind=small} ![[74-96] Transmembrane (i-o)](/pks/img/C.gif "[74-96] Transmembrane (i-o)"){kind=small} |
![[31-308] 6.49999999999992e-48 PF00664](/pks/img/H.gif "[31-308] 6.49999999999992e-48 PF00664"){kind=small}
![[380-572] 3.39999972437717e-16 SM00382](/pks/img/R.gif "[380-572] 3.39999972437717e-16 SM00382"){kind=small}
![[11-345] 9.4e-81 SSF90123](/pks/img/B.gif "[11-345] 9.4e-81 SSF90123"){kind=small}
![[492-506] PS00211](/pks/img/P.gif "[492-506] PS00211"){kind=small}
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