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Pyolu_00140 Pyolu_00140   Pyolu_00160 Pyolu_00160

CDS information : Pyolu_00150


close this sectionLocation

Organism
StrainPf-5
Entry namePyoluteorin
Contig
Start / Stop / Direction27,388 / 28,506 / + [in whole cluster]
27,388 / 28,506 / + [in contig]
Location27388..28506 [in whole cluster]
27388..28506 [in contig]
TypeCDS
Length1,119 bp (372 aa)
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close this sectionAnnotation

Category4.3 transport
Productputative ABC transporter permease protein
Product (GenBank)PltN
Gene
Gene (GenBank)pltN
EC number
Keyword
  • type I secretion system
Note
Note (GenBank)
  • predicted transmembrane subunit of ABC transporter
Reference
ACC
PmId
[16269724] Reciprocal regulation of pyoluteorin production with membrane transporter gene expression in Pseudomonas fluorescens Pf-5. (Appl Environ Microbiol. , 2005)
Related Reference
ACC
Q4VWC7
PmId
[16581203] Identification and characterization of a putative ABC transporter PltHIJKN required for pyoluteorin production in Pseudomonas sp. M18. (Gene. , 2006)

close this sectionSequence

selected fasta
>putative ABC transporter permease protein [PltN]
MDKLMNFLRELLFLFQKEFLAIVKDPANRVILIAPAIVQSLLFGYGATYDLNYVPYAVLD
QSQGRASTELLARFDASGVFARVSTLTSVDEIAPVIDRGSALLVLHIAADFDERLSRHEN
AGLQLILDGRNSTTAGMAAGHIANLVADFNQQFLAVDNAPVRLETRAWFNPNLQTRWNIV
PGLIAALSMIQTLMLAALSVAREREQGTFDQLLVTPLTPFVILLGKALPSVLIGLLQSSL
ILLIGLFWFKIPMIGSVLDLYLGLFVFTSACVGIGLSISALSANMQQAMVYTFVLMMPLI
LLSGLITPVHSMPEALQLLTYLDPLRFAIDLVRRIYLEGATLADVSWNLVPMLAVALVTL
PLAAWLFRNRLV
selected fasta
>putative ABC transporter permease protein [PltN]
ATGGACAAGCTGATGAATTTCCTACGCGAGTTGCTGTTCCTGTTTCAGAAGGAGTTCCTG
GCCATCGTCAAGGACCCGGCCAACCGGGTGATCCTGATTGCCCCGGCGATCGTCCAGTCA
TTGCTGTTCGGCTACGGCGCCACCTACGACCTGAACTACGTGCCCTATGCCGTGCTGGAT
CAGAGCCAGGGGCGCGCTTCGACAGAGCTTTTGGCACGCTTCGATGCCTCCGGGGTATTT
GCCCGAGTGTCGACCCTGACCAGCGTCGATGAGATCGCCCCGGTGATCGACCGGGGCAGT
GCCTTGCTGGTGCTGCATATCGCCGCAGACTTCGACGAGCGCCTGAGCCGGCATGAAAAC
GCCGGCTTGCAGTTGATCCTGGATGGGCGTAACTCGACGACCGCGGGAATGGCGGCCGGG
CATATCGCCAACCTGGTGGCTGACTTCAACCAGCAGTTCCTGGCGGTGGACAACGCGCCG
GTACGCCTGGAGACCCGTGCCTGGTTCAACCCCAACCTGCAAACCCGCTGGAACATAGTG
CCGGGCCTGATCGCCGCGCTGAGCATGATCCAGACCCTGATGCTGGCGGCGTTGTCGGTA
GCCAGGGAGCGCGAGCAGGGCACCTTCGACCAACTGCTGGTGACTCCGCTGACGCCTTTC
GTGATCCTGCTGGGCAAGGCCCTGCCGTCGGTACTGATCGGTCTCTTGCAGTCCAGCCTG
ATCCTCCTCATCGGCCTGTTCTGGTTCAAGATCCCCATGATCGGCTCCGTGCTGGACCTG
TACCTGGGGCTGTTCGTCTTCACCAGCGCCTGCGTGGGCATCGGGCTGTCGATCTCGGCG
CTGTCGGCCAACATGCAGCAGGCCATGGTGTACACCTTCGTGCTGATGATGCCGCTGATC
CTGCTCTCCGGCCTGATCACCCCGGTGCACAGCATGCCCGAGGCCCTGCAACTGCTGACC
TATCTCGATCCGCTGCGCTTTGCCATCGACCTGGTCAGGAGGATCTACCTGGAGGGGGCA
ACGCTGGCGGATGTGTCCTGGAACCTGGTGCCCATGCTTGCCGTTGCGCTGGTGACCCTG
CCGCTGGCTGCGTGGCTGTTTCGCAATCGATTGGTGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2010_04 		show BLAST table
InterPro
Database:interpro:26.0
IPR000412 ABC-2 (Family)
[139-370] 40.058 PS51012
PS51012   ABC_TM2
IPR013525 ABC-2 type transporter (Domain)
[175-336] 7.9e-31 PF01061
PF01061   ABC2_membrane
IPR013526 ABC-2 transporter (Family)
[257-281] 4.8e-08 PR00164 [294-313] 4.8e-08 PR00164 [314-333] 4.8e-08 PR00164
PR00164   ABC2TRNSPORT
SignalP No significant hit
TMHMM
[179-201] Transmembrane (o-i) [227-249] Transmembrane (i-o) [259-281] Transmembrane (o-i) [288-310] Transmembrane (i-o) [345-367] Transmembrane (o-i)
Transmembrane 5   
Pyolu_00140 Pyolu_00140   Pyolu_00160 Pyolu_00160
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