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CDS information : Pyolu_00150


close this sectionLocation

Organism
StrainPf-5
Entry namePyoluteorin
Contig
Start / Stop / Direction27,388 / 28,506 / + [in whole cluster]
27,388 / 28,506 / + [in contig]
Location27388..28506 [in whole cluster]
27388..28506 [in contig]
TypeCDS
Length1,119 bp (372 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category4.3 transport
Productputative ABC transporter permease protein
Product (GenBank)PltN
Gene
Gene (GenBank)pltN
EC number
Keyword
  • type I secretion system
Note
Note (GenBank)
  • predicted transmembrane subunit of ABC transporter
Reference
ACC
PmId
[16269724] Reciprocal regulation of pyoluteorin production with membrane transporter gene expression in Pseudomonas fluorescens Pf-5. (Appl Environ Microbiol. , 2005)
Related Reference
ACC
Q4VWC7
PmId
[16581203] Identification and characterization of a putative ABC transporter PltHIJKN required for pyoluteorin production in Pseudomonas sp. M18. (Gene. , 2006)

close this sectionSequence

selected fasta
>putative ABC transporter permease protein [PltN]
MDKLMNFLRELLFLFQKEFLAIVKDPANRVILIAPAIVQSLLFGYGATYDLNYVPYAVLD
QSQGRASTELLARFDASGVFARVSTLTSVDEIAPVIDRGSALLVLHIAADFDERLSRHEN
AGLQLILDGRNSTTAGMAAGHIANLVADFNQQFLAVDNAPVRLETRAWFNPNLQTRWNIV
PGLIAALSMIQTLMLAALSVAREREQGTFDQLLVTPLTPFVILLGKALPSVLIGLLQSSL
ILLIGLFWFKIPMIGSVLDLYLGLFVFTSACVGIGLSISALSANMQQAMVYTFVLMMPLI
LLSGLITPVHSMPEALQLLTYLDPLRFAIDLVRRIYLEGATLADVSWNLVPMLAVALVTL
PLAAWLFRNRLV
selected fasta
>putative ABC transporter permease protein [PltN]
ATGGACAAGCTGATGAATTTCCTACGCGAGTTGCTGTTCCTGTTTCAGAAGGAGTTCCTG
GCCATCGTCAAGGACCCGGCCAACCGGGTGATCCTGATTGCCCCGGCGATCGTCCAGTCA
TTGCTGTTCGGCTACGGCGCCACCTACGACCTGAACTACGTGCCCTATGCCGTGCTGGAT
CAGAGCCAGGGGCGCGCTTCGACAGAGCTTTTGGCACGCTTCGATGCCTCCGGGGTATTT
GCCCGAGTGTCGACCCTGACCAGCGTCGATGAGATCGCCCCGGTGATCGACCGGGGCAGT
GCCTTGCTGGTGCTGCATATCGCCGCAGACTTCGACGAGCGCCTGAGCCGGCATGAAAAC
GCCGGCTTGCAGTTGATCCTGGATGGGCGTAACTCGACGACCGCGGGAATGGCGGCCGGG
CATATCGCCAACCTGGTGGCTGACTTCAACCAGCAGTTCCTGGCGGTGGACAACGCGCCG
GTACGCCTGGAGACCCGTGCCTGGTTCAACCCCAACCTGCAAACCCGCTGGAACATAGTG
CCGGGCCTGATCGCCGCGCTGAGCATGATCCAGACCCTGATGCTGGCGGCGTTGTCGGTA
GCCAGGGAGCGCGAGCAGGGCACCTTCGACCAACTGCTGGTGACTCCGCTGACGCCTTTC
GTGATCCTGCTGGGCAAGGCCCTGCCGTCGGTACTGATCGGTCTCTTGCAGTCCAGCCTG
ATCCTCCTCATCGGCCTGTTCTGGTTCAAGATCCCCATGATCGGCTCCGTGCTGGACCTG
TACCTGGGGCTGTTCGTCTTCACCAGCGCCTGCGTGGGCATCGGGCTGTCGATCTCGGCG
CTGTCGGCCAACATGCAGCAGGCCATGGTGTACACCTTCGTGCTGATGATGCCGCTGATC
CTGCTCTCCGGCCTGATCACCCCGGTGCACAGCATGCCCGAGGCCCTGCAACTGCTGACC
TATCTCGATCCGCTGCGCTTTGCCATCGACCTGGTCAGGAGGATCTACCTGGAGGGGGCA
ACGCTGGCGGATGTGTCCTGGAACCTGGTGCCCATGCTTGCCGTTGCGCTGGTGACCCTG
CCGCTGGCTGCGTGGCTGTTTCGCAATCGATTGGTGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR000412 ABC-2 (Family)
 [139-370]  40.058 PS51012
PS51012   ABC_TM2
IPR013526 ABC-2 transporter (Family)
 [257-281]  4.8e-08 PR00164 [294-313]  4.8e-08 PR00164 [314-333]  4.8e-08 PR00164
PR00164   ABC2TRNSPORT
SignalP No significant hit
TMHMM
 [179-201]  Transmembrane (o-i) [227-249]  Transmembrane (i-o) [259-281]  Transmembrane (o-i) [288-310]  Transmembrane (i-o) [345-367]  Transmembrane (o-i)
Transmembrane 5