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CDS information : Rapam_00260


close this sectionLocation

Organism
StrainNRRL 5491
Entry nameRapamycin
Contig
Start / Stop / Direction105,198 / 103,801 / - [in whole cluster]
105,198 / 103,801 / - [in contig]
Locationcomplement(103801..105198) [in whole cluster]
complement(103801..105198) [in contig]
TypeCDS
Length1,398 bp (465 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)
Gene
Gene (GenBank)orfE
EC number
Keyword
Note
Note (GenBank)
Reference
ACC
PmId
[7644502] The biosynthetic gene cluster for the polyketide immunosuppressant rapamycin. (Proc Natl Acad Sci U S A. , 1995)
[8635730] Organisation of the biosynthetic gene cluster for rapamycin in Streptomyces hygroscopicus: analysis of genes flanking the polyketide synthase. (Gene. , 1996)

close this sectionSequence

selected fasta
>hypothetical protein
MSADRVAAQYNEEFRIPGSDLPTVAQHVKDFPTLAPWHGEYLARPLFVAEREMREFADDL
QHLIDTVFSLPDRMFGGDLDAFRSVLGISDGRWEAIRRFGDVPPPQFGRADMYHDGTSHK
LLEFNLGSEAGGWGLASEISRATMEIDAFADFARRNRLGYVHPIRAVVEALRHFAARVAP
GREPVVALLEWRGGLKDYGELWLNFQSALRSAGLDILVAEVSDVHERGGALYLGDTKIDV
VYRSFVPDQIAEEPDGWDLVAPLLRAHRAGETLTWTPLSSNMFANKACMALLSDPAWRRD
LGEDECRLIDRVLPWTRLINTDALKTDLVDECVARREQLILKVNGRGGGVGAVVGWETDD
ATWRRALEDSAAEGCVVQQRVIPRPELVVDPVSGETEEWHAAYGMFYTPHGCAGAFAKVV
PTGSGGIISIAAHAKARSAAVFHQSQLPVWGEVPAVGELPADAPK
selected fasta
>hypothetical protein
ATGTCGGCGGACCGGGTAGCAGCCCAGTACAACGAGGAGTTCCGCATACCGGGCAGTGAC
TTGCCCACGGTCGCCCAGCACGTCAAGGACTTCCCGACGCTCGCCCCCTGGCATGGCGAG
TATTTGGCCAGGCCCCTCTTCGTCGCCGAGCGTGAGATGCGCGAGTTCGCCGATGACCTG
CAGCATCTCATCGACACGGTTTTTTCCTTGCCGGACCGGATGTTCGGCGGCGATCTGGAC
GCATTCCGGTCGGTGCTCGGCATCAGCGACGGCCGCTGGGAAGCGATACGGCGGTTCGGT
GACGTACCGCCACCCCAGTTCGGCCGGGCCGACATGTACCACGACGGCACCTCGCACAAA
CTCCTCGAGTTCAATCTGGGGAGCGAGGCCGGCGGCTGGGGCCTCGCGAGTGAAATCTCC
AGGGCGACGATGGAGATTGACGCCTTCGCCGACTTCGCGCGCCGGAATCGGCTTGGTTAC
GTGCATCCCATTCGCGCCGTGGTGGAGGCGCTGCGCCACTTCGCCGCCCGGGTGGCACCC
GGGCGCGAACCGGTGGTGGCCCTGCTTGAATGGCGTGGGGGTCTGAAGGACTACGGCGAA
CTCTGGCTCAACTTCCAGTCCGCACTGCGCTCGGCGGGCCTGGACATCCTGGTGGCCGAG
GTCTCCGACGTGCACGAACGCGGCGGGGCGCTCTACCTCGGGGACACGAAGATCGACGTG
GTCTACCGCTCCTTCGTCCCGGACCAGATCGCCGAGGAGCCCGACGGCTGGGACCTGGTC
GCGCCCCTGCTGCGTGCGCACCGGGCGGGCGAGACGCTGACATGGACCCCGCTTTCCAGC
AACATGTTCGCCAACAAGGCCTGTATGGCGCTGCTTTCGGATCCGGCGTGGCGGCGCGAC
CTCGGCGAGGACGAGTGCCGGCTCATCGACCGGGTGCTGCCCTGGACCCGGCTGATCAAC
ACGGACGCGCTCAAGACCGACCTCGTCGACGAATGCGTGGCGCGGCGCGAGCAGTTGATC
CTGAAGGTCAACGGGCGCGGCGGGGGAGTGGGCGCCGTGGTGGGCTGGGAAACGGACGAC
GCCACTTGGCGGCGGGCTCTGGAGGACTCCGCCGCCGAAGGATGTGTCGTACAACAGCGG
GTGATCCCCCGGCCCGAGCTCGTGGTGGACCCGGTATCCGGGGAAACCGAGGAATGGCAT
GCGGCCTATGGCATGTTCTACACCCCGCACGGCTGTGCCGGAGCGTTCGCCAAGGTGGTG
CCGACCGGTTCGGGCGGCATCATTTCCATCGCGGCGCACGCCAAGGCGCGCAGCGCGGCC
GTCTTCCATCAGAGCCAGCTGCCCGTCTGGGGCGAAGTGCCTGCCGTGGGCGAATTGCCC
GCCGATGCGCCGAAGTAA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp domain (Domain)
 [195-280]  3.4e-05 PF03738
PF03738   GSP_synth
SignalP No significant hit
TMHMM No significant hit