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CDS information : Rifam_00090


close this sectionLocation

Organism
StrainS699
Entry nameRifamycin
Contig
Start / Stop / Direction7,690 / 8,874 / + [in whole cluster]
7,690 / 8,874 / + [in contig]
Location7690..8874 [in whole cluster]
7690..8874 [in contig]
TypeCDS
Length1,185 bp (394 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.2 function unknown
Productmammalian cell entry family protein
Product (GenBank)putative secreted protein
Gene
Gene (GenBank)
EC number
Keyword
  • mce operon
Note
Note (GenBank)
  • ORF27
Reference
ACC
Family/Domain
FD
IPR005693

close this sectionSequence

selected fasta
>mammalian cell entry family protein [putative secreted protein]
MSDTRFGLALTRGFTIAIVLALVVAGGIWWTLKDAGRNHLTAYFAGAVGLYEGNSVRMLG
VDMGTVTKITPMGNQVKVDFEYDRSVAVPADAKALIVAPSLVSDRYVQLAPAYTGGPRIS
DGAVIGLDRTEVPLEVDQLAASLARVSETLGPNGANKSGSLSNLLNTAAANVDGNGKALH
DTITKLGQAAGTLSGNKDDLFSTVENLGKFSQTLADSDKQVRSFESQLAGVSGYLASEKD
NLAATVQQLGTTLTAVQAFIDANHDRLKSNVDKLAGITKVLVDQRSSLAEILDVAPVGLS
NLVNTYNGAAGTLDARPNLNELTQPPLVMICRLLKQVGSKGIPDVLGNACESIAGVVDKV
IPLPSVAQTVQALQSGQLPPLPLPIAGQLYGGGQ
selected fasta
>mammalian cell entry family protein [putative secreted protein]
ATGAGTGACACCCGCTTCGGACTGGCCCTGACCCGGGGCTTCACCATCGCGATCGTCCTC
GCGCTCGTCGTCGCCGGCGGGATCTGGTGGACCCTCAAGGACGCCGGCCGCAACCACCTG
ACCGCGTACTTCGCCGGCGCCGTCGGCCTGTACGAGGGCAACAGCGTGCGGATGCTCGGC
GTCGACATGGGCACGGTCACCAAGATCACCCCGATGGGCAACCAGGTGAAGGTCGACTTC
GAGTACGACCGCTCGGTCGCCGTCCCGGCGGACGCGAAGGCGCTCATCGTGGCGCCGTCG
CTGGTGTCCGACCGCTACGTCCAGCTGGCCCCGGCCTACACCGGCGGCCCGCGGATCTCC
GACGGCGCGGTCATCGGCCTCGACCGCACCGAGGTGCCGCTGGAGGTCGACCAGCTGGCG
GCCAGCCTGGCCCGGGTCAGCGAGACCCTCGGCCCGAACGGCGCCAACAAGTCCGGGTCG
CTGTCGAACCTGCTGAACACCGCGGCGGCCAACGTCGACGGCAACGGCAAGGCCCTGCAC
GACACGATCACCAAGCTCGGCCAGGCGGCCGGCACGCTGTCGGGCAACAAGGACGACCTG
TTCTCCACCGTCGAGAACCTCGGCAAGTTCTCGCAGACGCTGGCCGACTCCGACAAGCAG
GTCCGCAGCTTCGAGAGCCAGCTCGCCGGCGTCAGCGGCTACCTGGCGTCCGAAAAGGAC
AACCTGGCCGCGACCGTGCAGCAGCTCGGCACGACGCTGACCGCGGTGCAGGCGTTCATC
GACGCCAACCACGACCGGCTCAAGTCCAATGTGGACAAGCTGGCCGGCATCACCAAGGTG
CTCGTCGACCAGCGCAGCTCGCTCGCCGAGATCCTCGACGTCGCCCCGGTCGGCCTGAGC
AACCTGGTCAACACCTACAACGGCGCGGCGGGCACGCTCGACGCCCGGCCGAACCTCAAC
GAGCTGACCCAGCCGCCGCTGGTGATGATCTGCCGGCTGCTCAAGCAGGTCGGCAGCAAG
GGCATTCCGGACGTGCTCGGCAACGCCTGCGAGAGCATCGCCGGCGTGGTCGACAAGGTG
ATCCCGCTGCCGTCCGTGGCGCAGACCGTGCAGGCCCTGCAGTCCGGTCAGCTGCCGCCG
CTGCCGCTGCCCATCGCCGGGCAGCTCTACGGAGGTGGCCAGTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR003399 Mammalian cell entry-related (Domain)
 [38-111]  2.1e-12 PF02470
PF02470   MCE
IPR005693 Mammalian cell entry (Family)
 [15-299]  2.4e-65 TIGR00996
TIGR00996   Mtu_fam_mce: virulence factor Mce family protein
IPR024516 Mammalian cell entry, C-terminal (Domain)
 [160-294]  6.8e-08 PF11887
PF11887   DUF3407
SignalP
 [1-25]  0.659 Signal
Eukaryota   
TMHMM
 [13-32]  Transmembrane (i-o)
Transmembrane 1