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CDS information : Rifam_00110


close this sectionLocation

Organism
StrainS699
Entry nameRifamycin
Contig
Start / Stop / Direction10,043 / 11,308 / + [in whole cluster]
10,043 / 11,308 / + [in contig]
Location10043..11308 [in whole cluster]
10043..11308 [in contig]
TypeCDS
Length1,266 bp (421 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.2 function unknown
Productmammalian cell entry family protein
Product (GenBank)putative secreted protein
Gene
Gene (GenBank)
EC number
Keyword
  • mce operon
Note
Note (GenBank)
  • ORF29
Reference
ACC
Family/Domain
FD
IPR005693

close this sectionSequence

selected fasta
>mammalian cell entry family protein [putative secreted protein]
MLIRRTKIQLIAFVVISVVAIVYALIRFAGLGSVFGNDGYTVKLQLNESGGIFTNAEVTY
RGYNIGRVGEMRLTATGLEADLNIDPSAPKVPADLDAVVANRSAVGEQYVDLKPKADQGP
YLAAGSVIPATKTTTPVSTDRLIGDLDSLAASVPVDSLRTVVDESYDAFRGTGGDLQKLL
DTARSFTTTAQQYLPQTIQLLDAGGQVLDTQNAEAANFASFSKSLNELTGTLKNSDGDLR
KLIGITPQVASQISQVLAESGPGLGALTANLLTTANLTVTRLDGIEQGLVTYPALAGAAS
SVAPGDGTAHLGLVLNLFNPPACTKGYLPYSKYRTGNDLSAKPAKEDAYCAEPKGSPINV
RGAQNAPYGGVPVAPSDSDVSANANRPAQELAEERDTRGVPGIVGSPGVSLTSLGSLLGL
T
selected fasta
>mammalian cell entry family protein [putative secreted protein]
ATGCTGATCCGCCGGACGAAGATCCAGCTGATCGCCTTCGTGGTGATCTCGGTCGTCGCG
ATCGTGTACGCGCTGATCCGGTTCGCCGGGCTCGGCAGCGTGTTCGGCAACGACGGCTAC
ACGGTGAAGTTGCAGCTCAACGAATCGGGCGGCATCTTCACCAACGCCGAGGTGACCTAC
CGCGGCTACAACATCGGCCGTGTCGGCGAAATGCGGCTCACCGCGACCGGGCTCGAGGCC
GACCTCAACATCGACCCCTCGGCGCCGAAGGTACCCGCGGACCTCGATGCCGTCGTCGCC
AACCGGTCGGCGGTCGGCGAGCAGTACGTCGACCTCAAGCCGAAGGCCGACCAGGGCCCC
TACCTGGCGGCCGGCTCGGTGATCCCGGCGACCAAGACGACCACGCCGGTCAGCACCGAC
CGGCTGATCGGCGACCTCGACTCGCTCGCCGCGTCGGTCCCGGTCGACTCGCTGCGCACG
GTCGTCGACGAGTCCTACGACGCCTTCCGCGGCACCGGCGGCGACCTGCAGAAGCTGCTG
GACACCGCGCGCAGCTTCACCACGACGGCGCAGCAGTACCTGCCGCAGACGATCCAGCTG
CTGGACGCCGGCGGCCAGGTGCTGGACACGCAGAACGCCGAGGCGGCGAACTTCGCCTCG
TTCAGCAAGAGCCTCAACGAGCTCACCGGCACGCTGAAGAACTCCGACGGCGACCTGCGC
AAGCTCATCGGGATCACCCCGCAGGTGGCGTCGCAGATCAGCCAGGTGCTGGCCGAATCC
GGCCCGGGCCTGGGTGCGCTGACGGCGAACCTGCTCACCACGGCCAACCTGACCGTGACC
CGCCTCGACGGGATCGAGCAGGGCCTGGTCACCTACCCGGCGCTGGCCGGCGCGGCGAGC
AGCGTGGCGCCCGGCGACGGCACCGCGCACCTCGGCCTGGTGCTCAACCTGTTCAACCCG
CCGGCCTGCACGAAGGGGTACCTGCCGTACTCGAAGTACCGCACCGGCAACGACCTCTCG
GCGAAGCCGGCGAAGGAAGACGCGTACTGTGCCGAACCGAAGGGCAGCCCGATCAACGTC
CGCGGGGCGCAGAACGCGCCCTACGGCGGGGTGCCGGTCGCGCCGTCGGACAGCGACGTC
TCGGCCAACGCGAACCGGCCGGCGCAGGAGCTGGCCGAGGAGCGGGACACCCGGGGGGTG
CCGGGCATCGTCGGCAGCCCCGGCGTCAGCCTGACCAGCCTGGGCTCGCTGCTCGGCCTG
ACCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR003399 Mammalian cell entry-related (Domain)
 [38-114]  1.8e-15 PF02470
PF02470   MCE
IPR005693 Mammalian cell entry (Family)
 [9-294]  1.5e-57 TIGR00996
TIGR00996   Mtu_fam_mce: virulence factor Mce family protein
SignalP
 [1-36]  0.989 Signal
Bacteria, Gram-positive   
 [1-24]  0.787 Signal
Eukaryota   
 [1-29]  0.947 Signal
Bacteria, Gram-negative   
TMHMM
 [13-35]  Transmembrane (i-o)
Transmembrane 1