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CDS information : Rubra_00340


close this sectionLocation

Organism
StrainNRRL 3061 (=NBRC 14000)
Entry nameRubradirin
Contig
Start / Stop / Direction54,910 / 56,058 / + [in whole cluster]
54,910 / 56,058 / + [in contig]
Location54910..56058 [in whole cluster]
54910..56058 [in contig]
TypeCDS
Length1,149 bp (382 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category5.4 hypothetical protein
Producthypothetical protein
Product (GenBank)hypothetical protein
Gene
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)
  • ORF9
Reference
ACC
PmId
[18080113] Biosynthesis of rubradirin as an ansamycin antibiotic from Streptomyces achromogenes var. rubradiris NRRL3061. (Arch Microbiol. , 2008)

close this sectionSequence

selected fasta
>hypothetical protein [hypothetical protein]
MSDDESVLMEAYQRFHATGPEWGGHHLSNHGPMAVEAMVRHGYADTVHRWIDNYTQRLEE
PPRGLAPVTEDDWREALGDLKRVADWTTLFQRELAERPWREVLATWWPRLIPGIIGGTAH
GAIRVAHLVHSLLAAEADSGSGPGSAGGPIDDNPRLVELADGLGYWAACWRPVPGEPSRR
TGSLTAADALAAVPSVADQQQGVPYRVGQLTTTDGWQSALGGLRAVDDPEQVPALLSQLT
DASVVHYLSYSHGQAVMLVHASTAPTAVLRVLPALPRELWVPSADAAWHASAALTAAASP
PQAVDASEIAVHTDGVTTAEDAMARAIDHGDEHVIKFADTAVEAFARTGERDALAAVGRC
VEMISHAEASGRSRIDGRGSST
selected fasta
>hypothetical protein [hypothetical protein]
ATGAGTGACGACGAGTCGGTCCTGATGGAGGCCTACCAGCGGTTCCACGCGACGGGACCG
GAGTGGGGCGGTCATCATCTCAGCAACCACGGCCCGATGGCCGTCGAGGCCATGGTCCGG
CACGGATACGCCGACACCGTGCATCGCTGGATAGACAACTACACGCAACGTCTGGAGGAA
CCACCGCGCGGGCTCGCCCCGGTCACCGAGGACGACTGGCGCGAGGCCCTTGGCGACTTG
AAGCGGGTGGCGGACTGGACGACGCTGTTCCAGCGCGAGCTCGCCGAGCGTCCCTGGCGG
GAGGTGCTGGCGACGTGGTGGCCGCGGCTGATACCCGGCATCATCGGCGGCACGGCGCAC
GGCGCGATCCGGGTCGCGCACCTGGTCCACTCCCTGTTGGCGGCCGAAGCCGATTCCGGC
TCGGGGCCGGGGTCCGCCGGCGGCCCCATCGACGACAACCCGCGCCTGGTCGAACTCGCC
GACGGCCTGGGCTACTGGGCCGCGTGCTGGCGGCCGGTGCCCGGCGAACCCTCCCGTCGG
ACCGGGTCGCTGACGGCGGCCGACGCCTTGGCCGCCGTGCCGAGCGTCGCCGACCAGCAA
CAGGGCGTGCCCTACCGAGTCGGCCAGCTCACGACCACCGACGGTTGGCAATCGGCACTC
GGCGGCCTGCGAGCCGTGGACGATCCCGAGCAGGTGCCCGCGCTGTTGTCCCAGCTGACC
GACGCCTCGGTGGTCCATTACCTGAGCTACAGCCACGGCCAGGCGGTCATGCTGGTCCAC
GCCTCGACGGCGCCGACCGCCGTCCTGCGCGTGCTGCCCGCCCTGCCGCGCGAACTGTGG
GTGCCCAGCGCGGACGCGGCATGGCACGCGAGCGCCGCCTTGACCGCGGCGGCCTCGCCC
CCGCAAGCAGTCGACGCCTCGGAAATCGCCGTCCACACCGACGGCGTCACGACGGCCGAG
GACGCCATGGCCCGGGCGATCGACCACGGGGACGAACACGTCATCAAGTTCGCCGACACC
GCCGTGGAAGCCTTCGCGCGTACCGGGGAACGGGACGCACTGGCGGCGGTGGGCCGATGC
GTGGAGATGATCAGCCACGCGGAGGCATCGGGACGTTCGCGAATCGATGGCCGCGGATCC
TCCACGTAA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR025337 Domain of unknown function DUF4243 (Domain)
 [26-342]  1.09999999999999e-60 PF14027
PF14027   DUF4243
SignalP No significant hit
TMHMM No significant hit