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CDS information : Salino_00200


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Organism
StrainDSM 41398
Entry nameSalinomycin
Contig
Start / Stop / Direction20,412 / 19,633 / - [in whole cluster]
20,412 / 19,633 / - [in contig]
Locationcomplement(19633..20412) [in whole cluster]
complement(19633..20412) [in contig]
TypeCDS
Length780 bp (259 aa)
Click on the icon to see Genetic map.

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Category
Product
Product (GenBank)DeoR family transcriptional regulator
Gene
Gene (GenBank)
EC number
Keyword
Note
Note (GenBank)

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selected fasta
>[DeoR family transcriptional regulator]
MSRDARWKSLLELLVERGRLDVEEAAGELDVSAATIRRDFDQLAEQQMLVRTRGGAVVHG
VSYELPLRYKTARNASEKQRIAKAVAELVTPGQAVGLTGGTTSTEVARSLAVRPDLGTGS
PALTIVTNALNIANELAVRPQFKIVVTGGVARAQSYELIGPLADGVLGQITMDVAVLGVV
AFDPEHGAAADDEAEAAINRLLCERADRVVVAADSSKLGKRAFARICAADRVDTLVTDTA
AGEEITGRFEDAGIRVVRV
selected fasta
>[DeoR family transcriptional regulator]
ATGTCGCGCGATGCCCGGTGGAAGTCCCTCCTCGAACTCCTCGTGGAGCGCGGGCGCCTC
GACGTCGAGGAGGCGGCGGGCGAACTCGACGTCTCCGCGGCGACCATCCGGCGCGACTTC
GACCAGCTCGCCGAGCAGCAGATGCTGGTACGCACCCGGGGCGGCGCGGTGGTCCACGGC
GTCTCCTACGAGCTGCCGCTGCGCTACAAGACGGCCCGCAACGCCTCCGAGAAGCAGCGC
ATCGCCAAGGCCGTCGCCGAGCTGGTCACCCCGGGCCAGGCGGTCGGCCTCACCGGCGGC
ACCACCAGCACCGAGGTCGCCCGCTCCCTCGCGGTACGCCCCGACCTCGGCACCGGCTCC
CCCGCGCTGACCATCGTCACCAACGCCCTCAACATCGCCAACGAGCTAGCGGTGCGGCCC
CAGTTCAAGATCGTGGTCACCGGCGGCGTCGCCCGCGCCCAGTCCTACGAGCTGATCGGC
CCGCTGGCCGACGGGGTGCTCGGCCAGATCACCATGGACGTCGCGGTGCTCGGCGTGGTC
GCCTTCGACCCGGAGCACGGCGCCGCCGCCGACGACGAGGCCGAGGCGGCGATCAACCGC
CTGCTGTGCGAGCGCGCGGACCGGGTGGTGGTCGCCGCCGACTCCAGCAAACTCGGCAAG
CGCGCCTTCGCCCGGATCTGCGCGGCGGACCGGGTGGACACCCTGGTCACCGACACCGCC
GCGGGCGAGGAGATCACCGGCCGCTTCGAGGACGCGGGCATCCGGGTCGTCCGGGTCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR001034 HTH DeoR N-terminal domain (Domain)
 [3-58]  PS51000
PS51000   HTH_DEOR_2
 [6-58]  2.70000183580794e-16 SM00420
SM00420   HTH_DEOR
 [24-38]  5.49999942632758e-07 PR00037 [38-56]  5.49999942632758e-07 PR00037
PR00037   HTHLACR
 [6-58]  1.5e-15 PF08220
PF08220   HTH_DeoR
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding (Domain)
 [1-55]  6.19999999999999e-08 G3DSA:1.10.10.10
G3DSA:1.10.10.10   Wing_hlx_DNA_bd
IPR014036 DeoR C-terminal sensor domain (Domain)
 [73-239]  2.70000000000002e-52 PF00455
PF00455   DeoRC
IPR018356 Transcription regulator, HTH DeoR-type, conserved site (Conserved_site)
 [6-40]  PS00894
PS00894   HTH_DEOR_1
SignalP No significant hit
TMHMM No significant hit