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CDS information : Vanco_00260


close this sectionLocation

Organism
StrainATCC 19795 (=NBRC 12806)
Entry nameVancomycin
Contig
Start / Stop / Direction55,035 / 56,111 / + [in whole cluster]
55,035 / 56,111 / + [in contig]
Location55035..56111 [in whole cluster]
55035..56111 [in contig]
TypeCDS
Length1,077 bp (358 aa)
Click on the icon to see Genetic map.

close this sectionAnnotation

Category2.1 modification addition of extender units
Productputative 4-hydroxymandelate oxidase
Product (GenBank)putative phenylglycolate oxidase
Gene
Gene (GenBank)hmo
EC number1.1.3.46
Keyword
  • Hpg
Note
Note (GenBank)
Reference
ACC
Related Reference
ACC
O52792
NITE
Chlor_00230
PmId
[11137816] Biosynthesis of L-p-hydroxyphenylglycine, a non-proteinogenic amino acid constituent of peptide antibiotics. (Chem Biol. , 2000)
[12240298] Characterisation of a hydroxymandelate oxidase involved in the biosynthesis of two unusual amino acids occurring in the vancomycin group of antibiotics. (Chem Commun (Camb). , 2001)
ACC
R4SKI1
PmId
[24884615] Complete genome sequence and comparative genomic analyses of the vancomycin-producing Amycolatopsis orientalis. (BMC Genomics. , 2014)

close this sectionSequence

selected fasta
>putative 4-hydroxymandelate oxidase [putative phenylglycolate oxidase]
MTHLCLDDLERAARTVLPGEIWDFLAGGSGAEASLEANRAALERIFVIPRMLRDLTGATG
EAEVLGRPAAVPMAVAPVAYQRLFHPEGELAAARAARDAGVPYTICTLSSVPLEEIAAVG
GRPWFQLYWLRDEKRSLELVRRAEDAGCEAIVFTVDVPWMGRRLRDLRNGFALPDSVTAA
NFDAGDAAHRRTRGQSAVAEHTAREFAPATWESVEAVRAHTDLPVVLKGILAVEDATRAV
DAGVGGIVVSNHGGRQLDSAVPGIEMLGEIAAALSGWDGEVLLDGGIRSGGDILKALALG
ASAVLVGRPVMWGLAAGGEDGARQSLELLAVEFRNALGLAGCDSVSAARRLGTRVLSR
selected fasta
>putative 4-hydroxymandelate oxidase [putative phenylglycolate oxidase]
ATGACCCACCTGTGCCTGGACGACCTCGAGCGGGCGGCGCGGACCGTCCTCCCCGGCGAG
ATCTGGGACTTTCTCGCCGGGGGCAGCGGCGCGGAGGCCTCCCTGGAGGCCAACCGCGCC
GCGCTCGAGCGGATCTTCGTCATCCCCCGGATGCTGCGGGACCTGACCGGCGCCACCGGC
GAGGCCGAGGTCCTCGGACGGCCCGCCGCGGTGCCGATGGCGGTCGCTCCGGTGGCGTAC
CAGCGGTTGTTCCATCCCGAGGGCGAACTCGCGGCCGCCCGCGCGGCACGGGACGCGGGT
GTGCCGTACACGATCTGCACCCTGAGCAGTGTCCCGCTGGAGGAGATCGCGGCCGTCGGC
GGACGGCCGTGGTTCCAGCTGTACTGGCTGCGCGACGAGAAACGCTCGCTGGAACTCGTG
CGCCGCGCGGAGGACGCCGGCTGCGAGGCGATCGTGTTCACCGTCGACGTGCCGTGGATG
GGGCGGCGGCTGCGGGATCTCCGGAACGGCTTCGCGCTGCCGGATTCGGTGACCGCGGCC
AACTTCGACGCCGGGGACGCCGCGCACCGCCGGACCCGCGGGCAGTCGGCGGTGGCGGAG
CACACCGCGCGCGAATTCGCGCCCGCCACTTGGGAATCGGTGGAAGCGGTCCGGGCGCAT
ACGGACCTTCCGGTGGTGCTCAAGGGGATCCTCGCGGTCGAGGACGCGACCCGCGCCGTC
GACGCGGGTGTCGGCGGCATCGTGGTGTCCAACCACGGAGGCCGTCAGTTGGACAGTGCC
GTGCCGGGTATCGAAATGCTGGGTGAGATCGCCGCCGCCCTCTCCGGATGGGACGGCGAA
GTACTGCTGGACGGGGGAATCCGGAGCGGTGGCGACATCCTCAAGGCGCTCGCGCTGGGG
GCGTCGGCCGTCCTGGTCGGGCGGCCGGTGATGTGGGGACTGGCCGCGGGCGGCGAGGAC
GGCGCCCGGCAGTCGCTCGAGCTGCTCGCCGTCGAATTCCGGAACGCGCTGGGTCTCGCG
GGCTGTGACTCGGTGAGCGCTGCCCGGCGGCTGGGCACGAGGGTCCTCAGCCGCTGA

close this sectionFeature

BLASTP
Database:UniProtKB:2011_09
show BLAST table
InterPro
Database:interpro:38.0
IPR000262 FMN-dependent dehydrogenase (Domain)
 [13-349]  2.59999999999995e-117 PF01070
PF01070   FMN_dh
IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site (Active_site)
 [250-256]  PS00557
PS00557   FMN_HYDROXY_ACID_DH_1
IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent (Family)
 [1-358]  PS51349
PS51349   FMN_HYDROXY_ACID_DH_2
 [1-357]  2.80000504261099e-130 PIRSF000138
PIRSF000138   Al-hdrx_acd_dh
IPR013785 Aldolase-type TIM barrel (Domain)
 [4-350]  3.70000000000004e-123 G3DSA:3.20.20.70
G3DSA:3.20.20.70   Aldolase_TIM
SignalP No significant hit
TMHMM No significant hit