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Gene cluster general information
Main part of this database. Comprehensive resource of secondary metabolites biosynthesis gene clusters.
- Cluster information
- Contains compound information, organism source, reconstituted gene cluster map, related references and assigned domains.
- CDS list
- Contains organism source, original genbank entries, curated annotations, inference literatures and assigned domains.
Advanced search
Search menus to retrieve genetic information from the aspects of annotation, domain composition and homology.
- Text search
- Searches against compound related information, CDS annotations, literatures and producing bacterial information.
- Module search
- Domain composition search against PKS/NRPS genes catalogued in this database.
- BLAST search
- Homology search (NCBI BLAST) against gene clusters, assigned genes or assigned domains.
KS seq Analysis
Ketosynthase (KS) and adenylation (A) domain sequence repository amplified from NBRC strains and NBDC strains.
- Taxonomic list
- Phylogenic view of amplified KS/A domain sequences based on original strains.
- Novelty chart
- Number and Novelty of KS and A domains in each strain Diagram of amplified KS/A domain sequence novelty based on similarity to known sequences.
- BLAST search
- Homology search (NCBI BLAST) against KS and/or A domain sequences amplified by PCR.
Other
Other menus for helping users to easily retrieve information.
- Category list
- The list of all genes catalogued in this database based on their biological roles.
- Get sequence
- Retrieve nucleotide/amino acid sequences catalogued in this database.
- Data download
- Distribution of whole nucleotide sequences, CDS sequences, curated annotations and genbank files.
Information
Other additional contents about this database.
- FAQ
- Frequently asked questions about this database.
- Contact us
- We will welcome users' comment which help us to improve this database.
