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微生物 : Sphingomonas wittichii

微生物株情報

NBRC番号 105917
学名 Sphingomonas wittichii
別名(シノニム) 該当データなし
由来 JCM 15750 <- DSM 6014 <- R.M. Wittich, RW1
他保存機関番号 CCUG 31198=CIP 107293=DSM 6014=JCM 10273=JCM 15750=KCTC 12908=MTCC 7933=NBRC 100425
他株番号
参考文献
1575472
Metabolism of dibenzo-p-dioxin by Sphingomonas sp. strain RW1. (Appl Environ Microbiol. 1992)
7764304
Purification of two isofunctional hydrolases (EC 3.7.1.8) in the degradative pathway for dibenzofuran in Sphingomonas sp. strain RW1. (Biodegradation. 1993)
8226678
Characterization of 2,2',3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium Sphingomonas sp. strain RW1. (J Bacteriol. 1993)
8407823
Dibenzofuran 4,4a-dioxygenase from Sphingomonas sp. strain RW1: angular dioxygenation by a three-component enzyme system. (J Bacteriol. 1993)
11321072
Proposal of Sphingomonas wittichii sp. nov. for strain RW1T, known as a dibenzo-p-dioxin metabolizer. (Int J Syst Evol Microbiol. 2001)
16535225
Degradation of Chlorinated Dibenzofurans and Dibenzo-p-Dioxins by Sphingomonas sp. Strain RW1. (Appl Environ Microbiol. 1996)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSwit_0807 Swit_0013
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseSwit_2677
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSwit_3227
TRPE
(NRULE_0143)
Anthranilate synthase component ISwit_2352
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseSwit_1051
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseSwit_2282 Swit_2250
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSwit_0660
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseSwit_0645
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseSwit_0863
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseSwit_4599
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseSwit_0977
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseSwit_0975
CATC
(NRULE_0054)
Muconolactone isomeraseSwit_0976
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseSwit_0978 Swit_1070
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ASwit_4338
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BSwit_4337
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseSwit_4336 Swit_0752 Swit_5019 Swit_4887
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseSwit_0977
CATC
(NRULE_0054)
Muconolactone isomeraseSwit_0976
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseSwit_1070 Swit_0978
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ASwit_4338
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BSwit_4337
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseSwit_4336 Swit_0752 Swit_5019 Swit_4887
CATB1
(NRULE_0386)
Muconate cycloisomeraseSwit_0975
Macrolide antibiotic resistance(NFUNC_0045)
必須D
ERE
(NRULE_0168)
Erythromycin esteraseSwit_1817
Metal-binding protein(NFUNC_0105)
必須C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSwit_1381 Swit_4418
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSwit_4418 Swit_1381
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSwit_4417
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinSwit_4416
Phenol degradation(NFUNC_0028)
必須C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseSwit_3045 Swit_2298
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseSwit_0898 Swit_4920 Swit_2055
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSwit_3096 Swit_1434 Swit_0757
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSwit_4150 Swit_3416 Swit_3413 Swit_3410 Swit_3409 Swit_3396 Swit_3307 Swit_3266 Swit_3264 Swit_3062 Swit_3056 Swit_3024 Swit_2634 Swit_2521 Swit_2502 Swit_2310 Swit_2285 Swit_2271 Swit_2261 Swit_2260 Swit_2253 Swit_2251 Swit_2239 Swit_2053 Swit_2034 Swit_1988 Swit_1987 Swit_1874 Swit_1829 Swit_1758 Swit_1708 Swit_1687 Swit_1686 Swit_1559 Swit_1552 Swit_1550 Swit_1549 Swit_1543 Swit_1542 Swit_1541 Swit_1531 Swit_1396 Swit_1067 Swit_0973 Swit_0969 Swit_0966 Swit_0890 Swit_4897 Swit_4861 Swit_4621 Swit_4297 Swit_4280 Swit_4278 Swit_4273 Swit_4269 Swit_4188 Swit_4174 Swit_0896 Swit_0893 Swit_0837 Swit_0744 Swit_0672 Swit_0538 Swit_0504 Swit_0336 Swit_0324 Swit_0962 Swit_0932
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSwit_4109 Swit_4267 Swit_1899
Phytic acid hydrolysis(NFUNC_0085)
必須A
PHYT
(NRULE_0258)
3-phytaseSwit_0531
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseSwit_2677

ゲノム配列情報

BioProject IDPRJNA17343
ローカスタグSWIT
INSDC entriesCP000699
ステータスComplete
解析状況
コンティグ数3
サイズ(bp) 5,915,246
遺伝子数 5,345
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1. (J Bacteriol. 2010) PMID: 20833805

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ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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