English site

微生物 : Roseobacter litoralis

微生物株情報

NBRC番号 15278
学名 Roseobacter litoralis
別名(シノニム) 該当データなし
由来 IFO 15278 <- Univ. Tokyo (T. Shiba, OCh149)
他保存機関番号 ATCC 49566=DSM 6996
他株番号 Och149
参考文献
該当データなし

推定保有機能 >>詳細

Download
タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseRLO149_c024600
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseRLO149_c023140
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseRLO149_c024300
TRPE
(NRULE_0143)
Anthranilate synthase component IRLO149_c024260
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseRLO149_c033710
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRLO149_c039530
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseRLO149_c011700
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseRLO149_c009840
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseRLO149_c009850
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseRLO149_c027530
 
PHAP3
(NRULE_0376)
PhasinRLO149_c009860
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRLO149_c005520 RLO149_c026750 RLO149_c021710 RLO149_c015220 RLO149_c006950
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRLO149_c015240 RLO149_c032610
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRRLO149_p830730 RLO149_c021890
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRRLO149_c027610
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRLO149_c032610 RLO149_c015240
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRLO149_c015230
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinRLO149_c015220
Nitrile hydratase(NFUNC_0002)
必須A
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaRLO149_c010030
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaRLO149_c010040
任意 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KRLO149_c010050
 
COBW
(NRULE_0007)
CobW/P47K family proteinRLO149_c006160 RLO149_c009280
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
必須A
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseRLO149_c036940
任意 
PQQA
(NRULE_0090)
Coenzyme PQQ synthesis protein ARLO149_c036920
 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BRLO149_c036930
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ERLO149_c036960
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseRLO149_c029170
RIBA
(NRULE_0201)
GTP cyclohydrolase-2RLO149_c039330 RLO149_c029170
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDRLO149_c029190
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseRLO149_c040460 RLO149_c029160
RIBE
(NRULE_0204)
Riboflavin synthaseRLO149_c029180
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFRLO149_c027250

ゲノム配列情報

BioProject IDPRJNA19357
ローカスタグ
INSDC entriesCP002623
ステータスComplete
解析状況
コンティグ数4
サイズ(bp) 4,745,450
遺伝子数 4,537
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis. (BMC Genomics. 2011) PMID: 21693016

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.4 MB 1.3 MB 910.4 KB 379.1 KB