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微生物 : Kyrpidia tusciae

微生物株情報

NBRC番号 15312
学名 Kyrpidia tusciae
別名（シノニム） Bacillus tusciae
由来 IFO 15312 <- DSM 2912 <- M. Aragno, strain T2
他保存機関番号 DSM 2912=KCTC 3885=LMG 17940=LMG 7136
他株番号 T2
参考文献
22180816
Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. (Stand Genomic Sci. 2011)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseBtus_3024
n-alkane hydroxylation(NFUNC_0008)
必須C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitBtus_0961 Btus_0959 Btus_1550 Btus_1552 Btus_2036 Btus_2065 Btus_2069
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitBtus_2069 Btus_2065 Btus_1552 Btus_1550 Btus_0961 Btus_0959 Btus_2036
FDR1
(NRULE_0032)
Oxygenase electron transfer componentBtus_0965 Btus_1551 Btus_2064
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinBtus_0960 Btus_1553 Btus_2037 Btus_2066
任意 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunitBtus_2068
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinBtus_1705 Btus_1161 Btus_0578 Btus_2519 Btus_2903 Btus_2425 Btus_2317 Btus_2067
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseBtus_0192
Arsenical resistance(NFUNC_0004)
必須E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBBtus_1985
ARSC2
(NRULE_0018)
Arsenate reductaseBtus_1986
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseBtus_1700 Btus_0374
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseBtus_2597
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseBtus_2598
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDBtus_2596
BIOB
(NRULE_0185)
Biotin synthaseBtus_2595
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseBtus_2787
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinBtus_1074
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBtus_1678 Btus_3290
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBtus_1678 Btus_3290
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinBtus_1677
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinBtus_1676
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseBtus_1692
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseBtus_1694
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseBtus_3025
PANC
(NRULE_0118)
Pantothenate synthetaseBtus_1693
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseBtus_1571 Btus_2072
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentBtus_0965 Btus_1551 Btus_2064
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinBtus_1553 Btus_0960 Btus_2037 Btus_2066
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinBtus_0578 Btus_2903 Btus_2519 Btus_2425 Btus_2317 Btus_2067 Btus_1705 Btus_1161
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseBtus_2175 Btus_3063 Btus_1634 Btus_1286 Btus_0974 Btus_2074
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseBtus_1824
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Btus_1824
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDBtus_1826
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseBtus_1823
RIBE
(NRULE_0204)
Riboflavin synthaseBtus_1825
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFBtus_1545
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSBtus_0012
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTBtus_0013

ゲノム配列情報

BioProject IDPRJNA31345
ローカスタグ
INSDC entriesCP002017
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 3,384,766
遺伝子数 3,150
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. (Stand Genomic Sci. 2011) PMID: 22180816

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
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gz		 FASTA
gz		 TSV
uncompressed
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