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微生物 : Photobacterium damselae subsp. damselae corrig.

微生物株情報

NBRC番号 15633
学名 Photobacterium damselae subsp. damselae corrig.
別名(シノニム) Listonella damsela (sic)
Listonella damselae
Photobacterium damsela subsp. damsela (sic)
Photobacterium damsela (sic)
Photobacterium damselae
Photobacterium histaminum
Vibrio damsela (sic)
Vibrio damselae
由来 IFO 15633 <- Hiroshima Univ. (K. Muroga, HUFP 9202) <- ATCC 33539 <- CDC 2588-80 <- D.T. Fisher
他保存機関番号 ATCC 33539=CAIM 331=CIP 102761=DSM 7482=LMG 7892=NCTC 11647
他株番号 HUFP 9202= CDC 2588-80
参考文献
1742198
Evaluation of the genus Listonella and reassignment of Listonella damsela (Love et al.) MacDonell and Colwell to the genus Photobacterium as Photobacterium damsela comb. nov. with an emended description. (Int J Syst Bacteriol. 1991)
7531996
Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al.) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov. (Int J Syst Bacteriol. 1995)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseVDA_003020
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseVDA_002393 VDA_003417
TRPE
(NRULE_0143)
Anthranilate synthase component IVDA_002392
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBVDA_000314
ARSC1
(NRULE_0017)
Arsenate reductaseVDA_001411
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseVDA_002949
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseVDA_002422
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseVDA_002425
 
PHAP1
(NRULE_0374)
PhasinVDA_002423
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseVDA_002297
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseVDA_002299
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDVDA_002295
BIOB
(NRULE_0185)
Biotin synthaseVDA_002298
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseVDA_001327
Histamine biosynthesis(NFUNC_0078)
必須B
HDC
(NRULE_0245)
Histidine decarboxylaseVDA_002795
任意 
HDCP
(NRULE_0246)
Histidine/histamine antiporterVDA_002794
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseVDA_001468
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinVDA_000515 VDA_000687
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorVDA_000515
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinVDA_000821 VDA_000774
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRVDA_002714
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinVDA_000774 VDA_000821
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorVDA_000515
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinVDA_000688
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinVDA_000687
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseVDA_002679 VDA_000613
RIBA
(NRULE_0201)
GTP cyclohydrolase-2VDA_002679 VDA_002191
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDVDA_002681
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseVDA_002678
RIBE
(NRULE_0204)
Riboflavin synthaseVDA_002335 VDA_002680
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFVDA_002850
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterVDA_001738 VDA_000372 VDA_000962
E
OPUE
(NRULE_0222)
Sodium/proline symporterVDA_001146
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseVDA_001240
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseVDA_001532
SERC
(NRULE_0210)
Phosphoserine aminotransferaseVDA_002369
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseVDA_002976
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseVDA_001265

ゲノム配列情報

BioProject IDPRJNA40485
ローカスタグ
INSDC entriesADBS01000000
ステータスWGS
解析状況
コンティグ数8
サイズ(bp) 5,046,328
遺伝子数 3,528
フィニッシングゴール
アセンブル方法
冗長度8x
シーケンス方法
  • 454
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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