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微生物 : Paenibacillus alvei

微生物株情報

NBRC番号 3343
学名 Paenibacillus alvei
別名（シノニム） Bacillus alvei
由来 IFO 3343 <- IMAB B-3-4 <- ATCC 6344 <- N.R. Smith, 662 <- A.G. Lochhead, 127
他保存機関番号 ATCC 6344=ATCC 8240=CCUG 1815=CIP 66.18=DSM 29=LMG 13253=NCCB 48008=NCIB 8198=NCIMB 9371=NRRL B-383=VKM B-502
他株番号 127=662=IMAB B-3-4
参考文献
8085788
Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. (Antonie Van Leeuwenhoek. 1993)
8863428
A polyphasic reassessment of the genus Paenibacillus, reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and of Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov., and emended descriptions of P. lautus and of P. peoriae. (Int J Syst Bacteriol. 1996)
9103612
Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. (Int J Syst Bacteriol. 1997)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemasePAV_1c09740
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferasePAV_6c04160
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須B
ANT4
(NRULE_0152)
Kanamycin nucleotidyltransferasePAV_9c01760
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinasePAV_9c01730
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class APAV_7c02290
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferasePAV_2c06560
TRPE
(NRULE_0143)
Anthranilate synthase component IPAV_3c05980
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginasePAV_2c02620
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductasePAV_11c01530
Arsenical resistance(NFUNC_0004)
必須E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBPAV_9c00320
ARSC2
(NRULE_0018)
Arsenate reductasePAV_9c00330
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphatasePAV_3c04450 PAV_7c01750 PAV_12c01140
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class APAV_7c02290
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthasePAV_1c04470
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferasePAV_1c05770
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDPAV_1c04830
BIOB
(NRULE_0185)
Biotin synthasePAV_1c04820
Fosfomycin resistance(NFUNC_0023)
必須B
FOSB
(NRULE_0099)
Metallothiol transferase FosBPAV_6c03910
Human milk oligosaccharides metabolism(NFUNC_0083)
必須A
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylasePAV_3c02040
任意 
GALE
(NRULE_0111)
UDP-glucose 4-epimerasePAV_4c02470 PAV_2c01230
Kanamycin resistance(NFUNC_0052)
必須A
ANT4
(NRULE_0152)
Kanamycin nucleotidyltransferasePAV_9c01760
任意 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferasePAV_6c04160
Macrolide antibiotic resistance(NFUNC_0045)
必須D
ERE
(NRULE_0168)
Erythromycin esterasePAV_2c03440 PAV_1c02750 PAV_7c02280
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinPAV_2c07670
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPAV_5c04320 PAV_4c05980 PAV_4c02520 PAV_1c04910 PAV_1c04670 PAV_1c04080 PAV_6c01760 PAV_6c01800 PAV_7c00970 PAV_10c00190 PAV_10c00480 PAV_11c01350
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntRPAV_3c04500
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPAV_1c04670 PAV_1c04080 PAV_1c04910 PAV_4c02520 PAV_4c05980 PAV_5c04320 PAV_6c01760 PAV_6c01800 PAV_7c00970 PAV_10c00190 PAV_10c00480 PAV_11c01350
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinPAV_5c04350
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylasePAV_3c06400
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferasePAV_3c06380
PANE
(NRULE_0117)
2-dehydropantoate 2-reductasePAV_4c05090
PANC
(NRULE_0118)
Pantothenate synthetasePAV_3c06390
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class APAV_7c02290
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthasePAV_3c05350
RIBA
(NRULE_0201)
GTP cyclohydrolase-2PAV_3c05350 PAV_1c08520
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDPAV_1c08510 PAV_3c05330
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthasePAV_3c05360
RIBE
(NRULE_0204)
Riboflavin synthasePAV_3c05340
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFPAV_8c02210
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinasePAV_9c01730
Tyramine biosynthesis(NFUNC_0079)
必須A
TYRDC
(NRULE_0248)
Pyridoxal-dependent tyrosine decarboxylasePAV_1c09980
任意 
TYRP
(NRULE_0249)
Tyrosine permeasePAV_1c09990
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinPAV_4c02690
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinPAV_4c02700
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinPAV_5c04020 PAV_4c02710
C
BCCT
(NRULE_0220)
BCCT family transporterPAV_3c00740
E
OPUE
(NRULE_0222)
Sodium/proline symporterPAV_8c01050
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSPAV_2c06730
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTPAV_2c06740

ゲノム配列情報

BioProject IDPRJNA170044
ローカスタグ
INSDC entriesAMBZ01000000
ステータスWGS
解析状況
コンティグ数25
サイズ(bp) 6,834,602
遺伝子数 6,605
フィニッシングゴール
アセンブル方法Newbler v. 2.6
冗長度17.8x
シーケンス方法
  • 454
  • Sanger
参考文献
  • Genome sequence of Paenibacillus alvei DSM 29, a secondary invader during European foulbrood outbreaks. (J Bacteriol. 2012) PMID: 23105091

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
2.0 MB 1.8 MB 1.2 MB 531.4 KB