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微生物 : Stackebrandtia nassauensis

微生物株情報

NBRC番号 102104
学名 Stackebrandtia nassauensis
別名（シノニム） 該当データなし
由来 NRRL B-16338 <- IMRU (M.P. Lechevalier, LLR-40K-21)
他保存機関番号 BCRC 16844=CIP 108903=DSM 44728=JCM 14905=NRRL B-16338
他株番号
参考文献
16014502
Stackebrandtia nassauensis gen. nov., sp. nov. and emended description of the family Glycomycetaceae. (Int J Syst Evol Microbiol. 2005)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSnas_0559
Alginate degradation(NFUNC_0062)
必須B
ALY
(NRULE_0227)
Alginate lyaseSnas_3336
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseSnas_3703
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseSnas_0327 Snas_4253
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseSnas_4099
C
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseSnas_2803
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSnas_6135
TRPE
(NRULE_0143)
Anthranilate synthase component ISnas_0686
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseSnas_2531 Snas_1651
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSnas_3430 Snas_5376
ARSC1
(NRULE_0017)
Arsenate reductaseSnas_3935
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSnas_4503
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseSnas_2397
Betaine biosynthesis (from glycine)(NFUNC_0050)
必須B
GSDMT
(NRULE_0181)
Glycine/sarcosine/dimethylglycine N-methyltransferaseSnas_2966
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSnas_5812
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSnas_5811
ECTC
(NRULE_0188)
L-ectoine synthaseSnas_5813
O-Glycan degradation(NFUNC_0084)
必須A
ENGBF
(NRULE_0257)
Endo-alpha-N-acetylgalactosaminidaseSnas_1136
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseSnas_5814
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSnas_5812
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSnas_5811
 
ECTC
(NRULE_0188)
L-ectoine synthaseSnas_5813
Hygromycin resistance(NFUNC_0055)
必須A
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseSnas_2803
Kanamycin resistance(NFUNC_0052)
必須C
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseSnas_4099
Macrolide antibiotic resistance(NFUNC_0045)
必須D
ERE
(NRULE_0168)
Erythromycin esteraseSnas_3682 Snas_4732 Snas_5446 Snas_6177 Snas_1297 Snas_1888 Snas_1373 Snas_2712
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseSnas_5372
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSnas_4075 Snas_0170
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSnas_1099
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRSnas_0250 Snas_6360
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSnas_1099
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSnas_1100
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseSnas_0089 Snas_0195
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseSnas_4826
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseSnas_3493 Snas_4116
PANC
(NRULE_0118)
Pantothenate synthetaseSnas_0090
Phytic acid hydrolysis(NFUNC_0085)
必須A
PHYT
(NRULE_0258)
3-phytaseSnas_5955
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
必須A
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseSnas_2177
任意 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BSnas_2174
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ESnas_2175
Streptogramin resistance(NFUNC_0027)
必須B
VGB
(NRULE_0114)
Virginiamycin B lyaseSnas_2867
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseSnas_0327 Snas_4253
任意 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseSnas_4099
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseSnas_4642
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseSnas_4643
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterSnas_6409
E
OPUE
(NRULE_0222)
Sodium/proline symporterSnas_0389
Vancomycin resistance (via D-Ala-D-Lac precursor)(NFUNC_0089)
必須A
VANA
(NRULE_0265)
D-alanine--D-lactate ligaseSnas_5356
VANH
(NRULE_0266)
D-specific alpha-keto acid dehydrogenaseSnas_5355
VANX
(NRULE_0267)
D-alanyl-D-alanine dipeptidaseSnas_5357
任意 
VANR
(NRULE_0284)
Two-component system response regulator VanRSnas_6028
 
VANS
(NRULE_0290)
Two-component system histidine kinase VanSSnas_6029
 
MURF2
(NRULE_0297)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-lactate ligaseSnas_5354
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSSnas_2410
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTSnas_2628

ゲノム配列情報

BioProject IDPRJNA19713
ローカスタグSNAS
INSDC entriesCP001778
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 6,841,557
遺伝子数 6,379
フィニッシングゴール
アセンブル方法ewbler version 1.1.02.15, Phrap
冗長度
シーケンス方法
参考文献
  • Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). (Stand Genomic Sci. 2009) PMID: 21304662

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
2.0 MB 1.8 MB 1.3 MB 487.9 KB