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微生物 : Actinopolyspora iraqiensis

微生物株情報

NBRC番号 103187
学名 Actinopolyspora iraqiensis
別名(シノニム) 該当データなし
由来 JCM 9891 <- AS 4.1193 <- A.M. Al-Tai, IQ-H1
他保存機関番号 AS 4.1193=DSM 44640=JCM 9891
他株番号 IQ-H1
参考文献
該当データなし

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseACTIR_217_00030
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseACTIR_660_00010
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitACTIR_471_00320 ACTIR_471_00300
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitACTIR_471_00320 ACTIR_471_00300
FDR1
(NRULE_0032)
Oxygenase electron transfer componentACTIR_226_00020 ACTIR_208_00060 ACTIR_471_00310 ACTIR_475_00050 ACTIR_511_00060
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinACTIR_471_00330
任意 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinACTIR_304_00060 ACTIR_698_00030
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須C
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseACTIR_140_00030
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseACTIR_388_00010
TRPE
(NRULE_0143)
Anthranilate synthase component IACTIR_715_00020
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseACTIR_482_00030
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseACTIR_664_00130
C
CHOX
(NRULE_0178)
Choline oxidaseACTIR_064_00020
Betaine biosynthesis (from glycine)(NFUNC_0050)
必須B
GSDMT
(NRULE_0181)
Glycine/sarcosine/dimethylglycine N-methyltransferaseACTIR_592_00010
Bioplastic degradation(NFUNC_0015)
必須B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseACTIR_268_00030
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseACTIR_206_00080
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseACTIR_206_00090
ECTC
(NRULE_0188)
L-ectoine synthaseACTIR_206_00070
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseACTIR_206_00060
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseACTIR_206_00080
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseACTIR_206_00090
 
ECTC
(NRULE_0188)
L-ectoine synthaseACTIR_206_00070
Hygromycin resistance(NFUNC_0055)
必須A
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseACTIR_140_00030
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinACTIR_201_00020 ACTIR_200_00090
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinACTIR_201_00010
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRACTIR_272_00050
J
SMTA
(NRULE_0009)
MetallothioneinACTIR_164_00030
Metallothionein(NFUNC_0006)
必須A
SMTA
(NRULE_0009)
MetallothioneinACTIR_164_00030
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinACTIR_201_00010
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseACTIR_430_00020
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseACTIR_429_00260
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterACTIR_348_00030 ACTIR_552_00010 ACTIR_664_00120 ACTIR_193_00020
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSACTIR_368_00030
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTACTIR_684_00030

ゲノム配列情報

BioProject IDPRJNA72401
ローカスタグACTIR
INSDC entriesAICW01000000
ステータスWGS
解析状況Improved High-Quality Draft
コンティグ数732
サイズ(bp) 3,836,673
遺伝子数 0
フィニッシングゴールImproved High-Quality Draft
アセンブル方法Newbler v. 2.3; Velvet v. 1.1.04
冗長度82.8x
シーケンス方法
  • 454-GS-FLX-Titanium
  • Illumina GAII
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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