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微生物 : Gordonia amicalis

微生物株情報

NBRC番号 100051
学名 Gordonia amicalis
別名（シノニム） 該当データなし
由来 JCM 11271 <- DSM 44461 <- M. Goodfellow, IEGM
他保存機関番号 DSM 44461=JCM 11271=KCTC 9940=CCUG 48822=BCRC 16387=CCRC 16387=CIP 108824
他株番号 IEGM
参考文献
11155977
Gordonia amicalis sp. nov., a novel dibenzothiophene-desulphurizing actinomycete. (Int J Syst Evol Microbiol. 2000)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOAMI_01_01410
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153GOAMI_32_00650 GOAMI_64_00090
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGOAMI_37_00520
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGOAMI_30_00650 GOAMI_30_00680
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGOAMI_30_00680 GOAMI_30_00650
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOAMI_27_00550 GOAMI_40_00490 GOAMI_41_00240 GOAMI_58_00180 GOAMI_68_00080 GOAMI_36_00450 GOAMI_34_00620 GOAMI_33_00110 GOAMI_30_00670 GOAMI_03_00800 GOAMI_24_00760
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOAMI_30_00700
任意 
RUBA
(NRULE_0039)
RubredoxinGOAMI_37_00500 GOAMI_37_00510
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOAMI_21_00540 GOAMI_14_00950 GOAMI_05_00820 GOAMI_33_00260 GOAMI_34_00190 GOAMI_40_00470 GOAMI_16_01450
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOAMI_42_00350
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGOAMI_12_00220 GOAMI_31_00340
TRPE
(NRULE_0143)
Anthranilate synthase component IGOAMI_37_00150
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGOAMI_15_00740
ARSC1
(NRULE_0017)
Arsenate reductaseGOAMI_26_00210
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOAMI_39_00470
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOAMI_27_00950
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOAMI_27_00960
ECTC
(NRULE_0188)
L-ectoine synthaseGOAMI_27_00940
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOAMI_07_01790
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGOAMI_15_01520
D
ERE
(NRULE_0168)
Erythromycin esteraseGOAMI_13_01120
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOAMI_21_01060 GOAMI_21_01030 GOAMI_09_00320 GOAMI_04_00710
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOAMI_03_00330 GOAMI_04_00680 GOAMI_21_01040
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGOAMI_26_00830
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOAMI_21_01040 GOAMI_03_00330 GOAMI_04_00680
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOAMI_21_01050
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGOAMI_26_00190
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOAMI_32_00660
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOAMI_36_00450 GOAMI_27_00550 GOAMI_24_00760 GOAMI_03_00800 GOAMI_40_00490 GOAMI_41_00240 GOAMI_58_00180 GOAMI_68_00080 GOAMI_30_00670 GOAMI_33_00110 GOAMI_34_00620
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOAMI_30_00700
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOAMI_33_00260 GOAMI_34_00190 GOAMI_21_00540 GOAMI_16_01450 GOAMI_14_00950 GOAMI_05_00820 GOAMI_40_00470
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGOAMI_26_00180 GOAMI_14_00920 GOAMI_01_01280 GOAMI_15_00430 GOAMI_22_00660 GOAMI_53_00090 GOAMI_50_00150 GOAMI_45_00240
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOAMI_42_00350
Thiocyanate hydrolase(NFUNC_0003)
必須A
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaGOAMI_31_00780
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaGOAMI_31_00780
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGOAMI_31_00770
B
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaGOAMI_31_00780
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGOAMI_31_00770
C
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaGOAMI_31_00780
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGOAMI_31_00770
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGOAMI_54_00160
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGOAMI_54_00060
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGOAMI_54_00170
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOAMI_14_01950
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOAMI_17_01360 GOAMI_14_01960
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGOAMI_26_00780
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOAMI_17_01280
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOAMI_17_01230

ゲノム配列情報

BioProject IDPRJDB393
ローカスタグGOAMI
INSDC entriesBANS00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数94
サイズ(bp) 4,915,471
遺伝子数 4,528
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.4 MB 1.3 MB 920.0 KB 337.5 KB