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微生物 : Gordonia hirsuta

微生物株情報

NBRC番号 16056
学名 Gordonia hirsuta
別名(シノニム) Gordona hirsuta (sic)
由来 IFO 16056 <- DSM 44140 <- S. Klatte, K718a
他保存機関番号 DSM 44140=ATCC 700255=CIP 105097=JCM 10105
他株番号 K718a
参考文献
8863412
Gordona hirsuta sp. nov. (Int J Syst Bacteriol. 1996)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOHSU_12_00010
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGOHSU_25_00320
任意 
RUBA
(NRULE_0039)
RubredoxinGOHSU_25_00320 GOHSU_25_00310
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOHSU_02_01090 GOHSU_28_00510 GOHSU_29_00340 GOHSU_01_00120
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOHSU_35_00420
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGOHSU_24_00030
TRPE
(NRULE_0143)
Anthranilate synthase component IGOHSU_02_00790
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGOHSU_04_01910
ARSC1
(NRULE_0017)
Arsenate reductaseGOHSU_19_00100
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOHSU_02_02300
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOHSU_54_00090
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOHSU_54_00100
ECTC
(NRULE_0188)
L-ectoine synthaseGOHSU_54_00080
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOHSU_15_00070
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGOHSU_04_00860
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOHSU_16_01460
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOHSU_22_00480 GOHSU_16_01490 GOHSU_22_01050
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOHSU_22_01050 GOHSU_22_00480 GOHSU_16_01490
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOHSU_22_00470
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOHSU_35_00420
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOHSU_14_00880
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOHSU_14_00890
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGOHSU_31_00150
E
OPUE
(NRULE_0222)
Sodium/proline symporterGOHSU_12_01060
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOHSU_18_01230
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOHSU_18_01190

ゲノム配列情報

BioProject IDPRJDB142
ローカスタグGOHSU
INSDC entriesBANT00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数77
サイズ(bp) 3,489,460
遺伝子数 3,215
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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