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微生物 : Gordonia rhizosphera

微生物株情報

NBRC番号 16068
学名 Gordonia rhizosphera
別名（シノニム） 該当データなし
由来 IFO 16068 <- IFO (M. Takeuchi, No.141)
他保存機関番号 CIP 105727=JCM 10426=VKM Ac-2072=DSM 44383
他株番号 141
参考文献
9734045
Gordonia rhizosphera sp. nov. isolated from the mangrove rhizosphere. (Int J Syst Bacteriol. 1998)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGORHZ_128_00020
n-alkane hydroxylation(NFUNC_0008)
必須C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGORHZ_197_00190 GORHZ_197_00210
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGORHZ_197_00210 GORHZ_197_00190
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGORHZ_078_00490 GORHZ_119_00400 GORHZ_125_00720 GORHZ_169_00300 GORHZ_185_00290 GORHZ_197_00200 GORHZ_197_01100 GORHZ_229_00170 GORHZ_233_00290 GORHZ_028_00100 GORHZ_062_00490 GORHZ_062_00810 GORHZ_069_00850 GORHZ_115_00240 GORHZ_115_00620
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGORHZ_197_00220
任意 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGORHZ_050_00160 GORHZ_062_00790 GORHZ_069_01190 GORHZ_069_00640 GORHZ_102_00650 GORHZ_115_00200 GORHZ_115_00260 GORHZ_125_00730 GORHZ_135_00760 GORHZ_136_00140 GORHZ_136_00110 GORHZ_143_00020 GORHZ_156_00140 GORHZ_168_00440 GORHZ_200_00160 GORHZ_200_00180 GORHZ_225_00230 GORHZ_233_00510 GORHZ_233_00300 GORHZ_028_00020 GORHZ_119_00390
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseGORHZ_245_00530
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGORHZ_167_00180 GORHZ_200_00240
TRPE
(NRULE_0143)
Anthranilate synthase component IGORHZ_158_00200
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGORHZ_213_00220 GORHZ_245_00610
ARSC1
(NRULE_0017)
Arsenate reductaseGORHZ_247_00970
任意 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseGORHZ_245_00640
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsDGORHZ_245_00630
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGORHZ_092_00260
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitGORHZ_062_00790
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitGORHZ_062_00800
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseGORHZ_062_00810
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentGORHZ_062_00810
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGORHZ_197_00200 GORHZ_028_00100 GORHZ_062_00490 GORHZ_062_00810 GORHZ_069_00850 GORHZ_078_00490 GORHZ_115_00240 GORHZ_115_00620 GORHZ_119_00400 GORHZ_125_00720 GORHZ_169_00300 GORHZ_185_00290 GORHZ_197_01100 GORHZ_229_00170 GORHZ_233_00290
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGORHZ_168_00440 GORHZ_028_00020 GORHZ_050_00160 GORHZ_062_00790 GORHZ_069_01190 GORHZ_069_00640 GORHZ_102_00650 GORHZ_115_00200 GORHZ_115_00260 GORHZ_119_00390 GORHZ_125_00730 GORHZ_135_00760 GORHZ_136_00140 GORHZ_136_00110 GORHZ_143_00020 GORHZ_156_00140 GORHZ_200_00160 GORHZ_200_00180 GORHZ_225_00230 GORHZ_233_00510 GORHZ_233_00300
 
FDR2
(NRULE_0057)
Ferredoxin reductaseGORHZ_200_00170 GORHZ_136_00130 GORHZ_145_00240 GORHZ_241_00120
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGORHZ_032_00140
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGORHZ_032_00130
ECTC
(NRULE_0188)
L-ectoine synthaseGORHZ_032_00150
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGORHZ_240_00030
Haloalkane degradation (conversion into hydroxyacid)(NFUNC_0010)
必須A
DHAA
(NRULE_0050)
Haloalkane dehalogenaseGORHZ_205_00240
HAD
(NRULE_0051)
(S)-2-haloacid dehalogenaseGORHZ_229_00110
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseGORHZ_115_00770
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGORHZ_032_00140
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGORHZ_032_00130
 
ECTC
(NRULE_0188)
L-ectoine synthaseGORHZ_032_00150
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGORHZ_123_00160
D
ERE
(NRULE_0168)
Erythromycin esteraseGORHZ_075_00150
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGORHZ_084_00040 GORHZ_182_00330 GORHZ_125_00130 GORHZ_182_00300
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGORHZ_084_00010 GORHZ_182_00310
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGORHZ_182_00310 GORHZ_084_00010
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGORHZ_182_00320
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseGORHZ_058_00060
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseGORHZ_003_00180
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseGORHZ_245_00090
PANC
(NRULE_0118)
Pantothenate synthetaseGORHZ_058_00070
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGORHZ_115_00590 GORHZ_018_00440 GORHZ_133_00010
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseGORHZ_126_00250
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseGORHZ_241_00120 GORHZ_136_00130 GORHZ_200_00170 GORHZ_145_00240
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGORHZ_197_00200 GORHZ_062_00810 GORHZ_069_00850 GORHZ_078_00490 GORHZ_115_00240 GORHZ_028_00100 GORHZ_229_00170 GORHZ_233_00290 GORHZ_062_00490 GORHZ_197_01100 GORHZ_115_00620 GORHZ_119_00400 GORHZ_125_00720 GORHZ_169_00300 GORHZ_185_00290
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGORHZ_197_00220
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGORHZ_156_00140 GORHZ_115_00200 GORHZ_115_00260 GORHZ_119_00390 GORHZ_125_00730 GORHZ_135_00760 GORHZ_136_00140 GORHZ_136_00110 GORHZ_143_00020 GORHZ_168_00440 GORHZ_200_00160 GORHZ_200_00180 GORHZ_225_00230 GORHZ_233_00510 GORHZ_233_00300 GORHZ_069_01190 GORHZ_062_00790 GORHZ_069_00640 GORHZ_050_00160 GORHZ_028_00020 GORHZ_102_00650
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGORHZ_026_00130 GORHZ_115_00580 GORHZ_085_00310 GORHZ_069_01160 GORHZ_037_00220 GORHZ_018_00450 GORHZ_245_00270 GORHZ_156_00230 GORHZ_125_01190 GORHZ_121_00310
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGORHZ_073_00210
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGORHZ_073_00310
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGORHZ_073_00200 GORHZ_053_00330
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGORHZ_046_00700
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGORHZ_053_00320 GORHZ_046_00710
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGORHZ_217_00370 GORHZ_125_00740
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGORHZ_192_00150
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGORHZ_192_00110

ゲノム配列情報

BioProject IDPRJDB4
ローカスタグGORHZ
INSDC entriesBAHC00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数261
サイズ(bp) 6,434,991
遺伝子数 5,930
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.9 MB 1.8 MB 1.2 MB 454.0 KB