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微生物 : Gordonia rubripertincta

微生物株情報

NBRC番号 101908
学名 Gordonia rubripertincta
別名（シノニム） Gordona rubropertinctus (sic)
Rhodococcus corallinus
Rhodococcus rubropertinctus
由来 JCM 3204 <- KCC A-0204 <- M. Goodfellow, N4 <- NCIB 9664 <- ATCC 14352 <- R.E. Gordon, 154
他保存機関番号 JCM 3204=ATCC 14352=BCRC 12520=CCUG 34957=CIP 104661=DSM 43197=IFM 10321=IFO 16048=KCTC 9802=LMG 5367=NBRC 16048=NCIMB 9664=VKM Ac-1016=CBS 606.67
他株番号 KCC A-0204=N4=154=IMET 7277
参考文献
874450
The actinomycete-genus Rhodococcus: a home for the "rhodochrous" complex. (J Gen Microbiol. 1977)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGORBP_039_01440
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153GORBP_109_00410 GORBP_030_00030
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGORBP_055_00090 GORBP_055_00110
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGORBP_055_00090 GORBP_055_00110
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGORBP_055_00100 GORBP_037_00360 GORBP_033_00070 GORBP_012_00240 GORBP_006_00670 GORBP_104_00690 GORBP_103_00080 GORBP_095_00090 GORBP_089_00070 GORBP_077_00060 GORBP_065_01250 GORBP_060_00750 GORBP_060_00060 GORBP_055_00320
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGORBP_055_00120
任意 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGORBP_006_00510 GORBP_006_00120 GORBP_002_00150 GORBP_060_00770 GORBP_065_01120 GORBP_072_00620 GORBP_077_00070 GORBP_077_00670 GORBP_095_00110 GORBP_046_00470 GORBP_097_00280 GORBP_037_00210 GORBP_012_01640 GORBP_012_01330
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseGORBP_060_01340
Aniline degradation (conversion into catechol)(NFUNC_0075)
必須A
ATDA1
(NRULE_0240)
Gamma-glutamylanilide synthetaseGORBP_002_00110
ATDA3
(NRULE_0357)
Aniline dioxygenase large subunitGORBP_002_00150
ATDA4
(NRULE_0358)
Aniline dioxygenase small subunitGORBP_002_00140
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGORBP_089_00070 GORBP_055_00100 GORBP_055_00320 GORBP_060_00060 GORBP_065_01250 GORBP_060_00750 GORBP_077_00060 GORBP_104_00690 GORBP_006_00670 GORBP_012_00240 GORBP_033_00070 GORBP_037_00360 GORBP_103_00080 GORBP_095_00090
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGORBP_077_00670 GORBP_072_00620 GORBP_002_00150 GORBP_006_00120 GORBP_006_00510 GORBP_012_01330 GORBP_012_01640 GORBP_037_00210 GORBP_046_00470 GORBP_060_00770 GORBP_065_01120 GORBP_097_00280 GORBP_095_00110 GORBP_077_00070
 
FDR2
(NRULE_0057)
Ferredoxin reductaseGORBP_030_00020 GORBP_049_00840 GORBP_012_01750
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGORBP_101_00350 GORBP_075_00560
TRPE
(NRULE_0143)
Anthranilate synthase component IGORBP_041_00430
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGORBP_035_00290 GORBP_001_00220 GORBP_104_00100
ARSC1
(NRULE_0017)
Arsenate reductaseGORBP_108_00150
任意 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsDGORBP_035_00260
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGORBP_094_00640
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitGORBP_060_00770 GORBP_095_00110
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitGORBP_095_00100 GORBP_060_00760
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseGORBP_095_00090 GORBP_060_00750
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentGORBP_060_00750 GORBP_095_00090
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGORBP_033_00070 GORBP_037_00360 GORBP_055_00100 GORBP_055_00320 GORBP_060_00060 GORBP_060_00750 GORBP_065_01250 GORBP_077_00060 GORBP_089_00070 GORBP_095_00090 GORBP_103_00080 GORBP_104_00690 GORBP_012_00240 GORBP_006_00670
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGORBP_077_00070 GORBP_006_00510 GORBP_012_01330 GORBP_012_01640 GORBP_037_00210 GORBP_046_00470 GORBP_060_00770 GORBP_065_01120 GORBP_072_00620 GORBP_097_00280 GORBP_095_00110 GORBP_077_00670 GORBP_002_00150 GORBP_006_00120
 
FDR2
(NRULE_0057)
Ferredoxin reductaseGORBP_012_01750 GORBP_049_00840 GORBP_030_00020
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseGORBP_012_02140
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGORBP_068_01420
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGORBP_068_01430
ECTC
(NRULE_0188)
L-ectoine synthaseGORBP_068_01410
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGORBP_102_00130
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseGORBP_035_00100
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGORBP_044_00080 GORBP_044_00110 GORBP_074_00360
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGORBP_044_00090 GORBP_074_00390
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGORBP_108_00660
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGORBP_044_00090 GORBP_074_00390
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGORBP_044_00100
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGORBP_108_00130
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseGORBP_012_01750 GORBP_030_00020 GORBP_049_00840
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGORBP_065_01250 GORBP_006_00670 GORBP_012_00240 GORBP_033_00070 GORBP_037_00360 GORBP_055_00100 GORBP_055_00320 GORBP_060_00060 GORBP_060_00750 GORBP_077_00060 GORBP_089_00070 GORBP_095_00090 GORBP_103_00080 GORBP_104_00690
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGORBP_055_00120
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGORBP_097_00280 GORBP_095_00110 GORBP_077_00670 GORBP_077_00070 GORBP_072_00620 GORBP_065_01120 GORBP_060_00770 GORBP_046_00470 GORBP_037_00210 GORBP_012_01640 GORBP_012_01330 GORBP_006_00510 GORBP_002_00150 GORBP_006_00120
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGORBP_065_00500 GORBP_060_00200 GORBP_006_00430 GORBP_012_01300 GORBP_028_00460 GORBP_039_01290 GORBP_049_00360 GORBP_108_00120 GORBP_077_00610 GORBP_065_01220
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseGORBP_060_01340
Thiocyanate hydrolase(NFUNC_0003)
必須A
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaGORBP_103_00450
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaGORBP_103_00450
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGORBP_103_00460
B
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaGORBP_103_00450
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGORBP_103_00460
C
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaGORBP_103_00450
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGORBP_103_00460
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGORBP_068_00510
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGORBP_068_00400
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGORBP_068_00520
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGORBP_100_00140
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGORBP_100_00150 GORBP_053_00570
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGORBP_108_00610 GORBP_012_02120
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGORBP_053_00490
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGORBP_053_00440

ゲノム配列情報

BioProject IDPRJNA71851
ローカスタグGORBP
INSDC entriesBAHB00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数134
サイズ(bp) 5,204,225
遺伝子数 4,802
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
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