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推定保有機能 : Roseobacter denitrificans

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseRD1_3240
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenase
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunit
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunit
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRD1_0005
MME
(NRULE_0033)
Multicomponent monooxygenase effector protein
任意 
RUBA
(NRULE_0039)
Rubredoxin
 
RUBB
(NRULE_0040)
Rubredoxin reductase
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunit
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRD1_1174 RD1_4167 RD1_0563 RD1_1031 RD1_3683 RD1_2816 RD1_2360
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseRD1_3084
Aniline degradation (conversion into catechol)(NFUNC_0075)
必須A
ATDA1
(NRULE_0240)
Gamma-glutamylanilide synthetase
ATDA3
(NRULE_0357)
Aniline dioxygenase large subunit
ATDA4
(NRULE_0358)
Aniline dioxygenase small subunit
任意 
ATDA2
(NRULE_0241)
Putative gamma-glutamylanilide hydrolase
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRD1_0005
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRD1_1031 RD1_4167 RD1_3683 RD1_2816 RD1_2360 RD1_1174 RD1_0563
 
FDR2
(NRULE_0057)
Ferredoxin reductaseRD1_0947
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseRD1_3209
TRPE
(NRULE_0143)
Anthranilate synthase component IRD1_3205
Anthranilate degradation (via hydroxylation)(NFUNC_0018)
必須A
ANTA
(NRULE_0044)
Anthranilate 1,2-dioxygenase large subunit
ANTB
(NRULE_0045)
Anthranilate 1,2-dioxygenase small subunit
任意 
ANTC
(NRULE_0081)
Anthranilate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRD1_0005
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRD1_4167 RD1_0563 RD1_1031 RD1_1174 RD1_2360 RD1_2816 RD1_3683
 
FDR2
(NRULE_0057)
Ferredoxin reductaseRD1_0947
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseRD1_1416
Aromatic hydrocarbon degradation (via hydroxylation by dioxygenase)(NFUNC_0016)
必須A
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitRD1_3683 RD1_2816 RD1_1031
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunit
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRD1_0005
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRD1_1031 RD1_0563 RD1_4167 RD1_3683 RD1_2816 RD1_2360 RD1_1174
 
FDR2
(NRULE_0057)
Ferredoxin reductaseRD1_0947
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC1
(NRULE_0017)
Arsenate reductase
B
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC2
(NRULE_0018)
Arsenate reductaseRD1_2397
C
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC3
(NRULE_0019)
Arsenate reductase
D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsB
ARSC1
(NRULE_0017)
Arsenate reductase
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsB
ARSC2
(NRULE_0018)
Arsenate reductaseRD1_2397
F
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsB
ARSC3
(NRULE_0019)
Arsenate reductase
任意 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPase
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsD
 
ARSH
(NRULE_0021)
ArsH protein
Artificial lacto-N-biose biosynthesis(NFUNC_0026)
必須A
SP
(NRULE_0109)
Sucrose phosphorylase
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferase
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseRD1_4203 RD1_B0040
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRD1_0064
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunit
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunit
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRD1_0005
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRD1_4167 RD1_3683 RD1_2816 RD1_2360 RD1_1174 RD1_1031 RD1_0563
 
FDR2
(NRULE_0057)
Ferredoxin reductaseRD1_0947
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseRD1_2024
B
GBSB
(NRULE_0176)
Alcohol dehydrogenase
BETB
(NRULE_0177)
Betaine aldehyde dehydrogenaseRD1_2023
C
CHOX
(NRULE_0178)
Choline oxidase
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseRD1_1887
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymerase
C
PHAZ3
(NRULE_0088)
Poly(3-hydroxyalkanoate) depolymerase
任意 
PHAY
(NRULE_0022)
D-(-)-3-hydroxybutyrate oligomer hydrolase
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseRD1_1888
B
PHAE
(NRULE_0012)
Poly(3-hydroxyalkanoate) polymerase PhaE subunit
PHAC2
(NRULE_0373)
Poly(3-hydroxyalkanoate) polymerase PhaC subunit
C
PHAR
(NRULE_0013)
Poly(3-hydroxyalkanoate) polymerase PhaR subunit
PHAC2
(NRULE_0373)
Poly(3-hydroxyalkanoate) polymerase PhaC subunit
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseRD1_3395
 
PHAP1
(NRULE_0374)
Phasin
 
PHAP2
(NRULE_0375)
Phasin
 
PHAP3
(NRULE_0376)
PhasinRD1_1889
 
PHAF
(NRULE_0377)
Phasin PhaF
 
PHAI
(NRULE_0378)
Phasin PhaI
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRD1_3932
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRD1_3932
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
CATB1
(NRULE_0386)
Muconate cycloisomerase
C
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
CATB1
(NRULE_0386)
Muconate cycloisomerase
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
Chlorocatechol degradation (beta-ketoadipate pathway)(NFUNC_0104)
必須A
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseRD1_2059 RD1_3175 RD1_3095
CLCE
(NRULE_0384)
Maleylacetate reductase
CLCB
(NRULE_0387)
Chloromuconate cycloisomerase
B
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseRD1_3175 RD1_3095 RD1_2059
CLCE
(NRULE_0384)
Maleylacetate reductase
任意 
CLCF
(NRULE_0385)
Chloromuconolactone dehalogenase
Dibenzothiophene degradation (via desulfurization)(NFUNC_0029)
必須A
DSZA
(NRULE_0103)
Dibenzothiophene-5,5-dioxide monooxygenase
DSZB
(NRULE_0104)
2'-hydroxybiphenyl-2-sulfinate desulfinase
DSZC
(NRULE_0105)
Dibenzothiophene monooxygenase
任意 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRD1_2312 RD1_2331 RD1_2152
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
必須A
EDIO
(NRULE_0058)
extradiol dioxygenase
METAH
(NRULE_0059)
meta-cleavage compound hydrolase
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydratase
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolase
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenase
B
EDIO
(NRULE_0058)
extradiol dioxygenase
2HMSD
(NRULE_0060)
2-hydroxymuconic semialdehyde dehydrogenase
4OT
(NRULE_0061)
4-oxalocrotonate tautomeraseRD1_1131
4OD
(NRULE_0062)
4-oxalocrotonate decarboxylase
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydratase
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolase
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenase
Folate biosynthesis(NFUNC_0044)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseRD1_3209
DHPS
(NRULE_0144)
Dihydropteroate synthaseRD1_1951
FOLM
(NRULE_0146)
Dihydrofolate reductase FolM
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseRD1_1950
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseRD1_1357
FOLC
(NRULE_0160)
Bifunctional protein FolCRD1_0327
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IRD1_3657
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseRD1_3209
DHPS
(NRULE_0144)
Dihydropteroate synthaseRD1_1951
FOLA
(NRULE_0147)
Dihydrofolate reductaseRD1_1875
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseRD1_1950
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseRD1_1357
FOLC
(NRULE_0160)
Bifunctional protein FolCRD1_0327
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IRD1_3657
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
C
GLAT
(NRULE_0142)
Glutamine amidotransferaseRD1_3209
DHPS
(NRULE_0144)
Dihydropteroate synthaseRD1_1951
DFR2
(NRULE_0148)
Dihydrofolate reductase type 2
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseRD1_1950
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseRD1_1357
FOLC
(NRULE_0160)
Bifunctional protein FolCRD1_0327
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IRD1_3657
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
Haloalkane degradation (conversion into hydroxyacid)(NFUNC_0010)
必須A
DHAA
(NRULE_0050)
Haloalkane dehalogenase
HAD
(NRULE_0051)
(S)-2-haloacid dehalogenaseRD1_3929
B
DHAA
(NRULE_0050)
Haloalkane dehalogenase
DEH
(NRULE_0075)
Haloacetate dehalogenase
Human milk oligosaccharides metabolism(NFUNC_0083)
必須A
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
任意 
NAHK
(NRULE_0256)
N-acetylhexosamine 1-kinase
 
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferase
 
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseRD1_4203 RD1_B0040
4-hydroxyphenylacetate degradation(NFUNC_0068)
必須A
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
B
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRD1_2312 RD1_2331 RD1_2152
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
D
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRD1_2331 RD1_2312 RD1_2152
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
E
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRD1_2152 RD1_2331 RD1_2312
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
F
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRD1_2312 RD1_2331 RD1_2152
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
G
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
H
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRD1_3739 RD1_3884 RD1_2915 RD1_2327 RD1_1733 RD1_1483
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulator
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRD1_2913 RD1_1059
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntR
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRRD1_2304
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxR
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntR
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikR
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscR
J
SMTA
(NRULE_0009)
Metallothionein
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRD1_1059 RD1_2913
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulator
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRD1_2914
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinRD1_2915
Naphthalene degradation (via hydroxylation by dioxygenase)(NFUNC_0067)
必須A
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitRD1_3683 RD1_2816 RD1_1031
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunit
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenase
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAHG
(NRULE_0190)
Salicylate hydroxylase
B
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitRD1_3683 RD1_2816 RD1_1031
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunit
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenase
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAGG
(NRULE_0191)
Salicylate 5-hydroxylase alpha subunit
NAGH
(NRULE_0192)
Salicylate 5-hydroxylase beta subunit
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRD1_0005
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRD1_4167 RD1_3683 RD1_2816 RD1_2360 RD1_1174 RD1_1031 RD1_0563
 
FDR2
(NRULE_0057)
Ferredoxin reductaseRD1_0947
Nitrile hydratase(NFUNC_0002)
必須A
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaRD1_1908
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaRD1_1909
任意 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KRD1_1910
 
COBW
(NRULE_0007)
CobW/P47K family proteinRD1_3828 RD1_1856
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylase
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseRD1_0093
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseRD1_2198
PANC
(NRULE_0118)
Pantothenate synthetaseRD1_0091
Phenol degradation(NFUNC_0028)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunit
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunit
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylase
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylase
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseRD1_0947
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRD1_0005
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector protein
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRD1_2360 RD1_0563 RD1_4167 RD1_3683 RD1_2816 RD1_1174 RD1_1031
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRD1_2331 RD1_2312 RD1_2152
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRD1_3775
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRD1_3774
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomerase
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseRD1_3773
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRD1_3932
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRD1_3775
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRD1_3774
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
必須A
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseRD1_1152
任意 
PQQA
(NRULE_0090)
Coenzyme PQQ synthesis protein ARD1_1154
 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BRD1_1153
 
PQQD
(NRULE_0093)
Coenzyme PQQ synthesis protein D
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ERD1_1150
 
PQQF
(NRULE_0095)
Coenzyme PQQ synthesis protein F
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseRD1_1801
RIBA
(NRULE_0201)
GTP cyclohydrolase-2RD1_1801 RD1_0043
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDRD1_1799
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseRD1_0560 RD1_1803
RIBE
(NRULE_0204)
Riboflavin synthaseRD1_1800
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFRD1_3523
Thiocyanate hydrolase(NFUNC_0003)
必須A
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaRD1_1910 RD1_1909
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaRD1_1909 RD1_1910
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gamma
B
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaRD1_1910 RD1_1909
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gamma
C
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaRD1_1910 RD1_1909
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gamma
Toluene degradation (conversion into protocatechuate via p-cresol)(NFUNC_0007)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunit
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunit
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRD1_0005
MME
(NRULE_0033)
Multicomponent monooxygenase effector protein
PCHF
(NRULE_0035)
4-cresol dehydrogenase flavoprotein subunit
PCHC
(NRULE_0036)
4-cresol dehydrogenase cytochrome c subunit
PCHA
(NRULE_0037)
p-hydroxybenzaldehyde dehydrogenase
POBA
(NRULE_0038)
p-hydroxybenzoate hydroxylaseRD1_2336
任意 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunit
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRD1_4167 RD1_3683 RD1_2816 RD1_2360 RD1_1174 RD1_0563 RD1_1031
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthase
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolase
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeRD1_2872
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding protein
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease protein
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinRD1_2932 RD1_0014
B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding protein
EHUC
(NRULE_0217)
Ectoine ABC transporter permease protein
EHUD
(NRULE_0218)
Ectoine ABC transporter permease protein
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding protein
C
BCCT
(NRULE_0220)
BCCT family transporter
D
PROP
(NRULE_0221)
Osmoprotectant transporter
E
OPUE
(NRULE_0222)
Sodium/proline symporter
F
TEAA
(NRULE_0223)
TRAP transporter substrate-binding protein TeaA
TEAB
(NRULE_0224)
TRAP transporter small transmembrane protein TeaB
TEAC
(NRULE_0225)
TRAP transporter large transmembrane protein TeaC
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenase
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenase
SERC
(NRULE_0210)
Phosphoserine aminotransferase
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseRD1_3123
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseRD1_1362