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推定保有機能 : Cupriavidus metallidurans

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タイプパターン 構成遺伝子 該当CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseRmet_1766
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporter
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseRmet_1400
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenase
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRmet_1784 Rmet_1330 Rmet_1328 Rmet_1316 Rmet_1312 Rmet_1786
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRmet_1786 Rmet_1312 Rmet_1316 Rmet_1328 Rmet_1330 Rmet_1784
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_1326 Rmet_0543 Rmet_4932 Rmet_5549 Rmet_5517 Rmet_4884 Rmet_3630 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1311
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRmet_1313 Rmet_1329 Rmet_1785
任意 
RUBA
(NRULE_0039)
RubredoxinRmet_0668 Rmet_1289 Rmet_3710 Rmet_3952
 
RUBB
(NRULE_0040)
Rubredoxin reductase
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitRmet_1327 Rmet_1783
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunitRmet_1315
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_1314 Rmet_1812 Rmet_2437 Rmet_2618 Rmet_3230 Rmet_4882 Rmet_5546 Rmet_5548
Aniline degradation (conversion into catechol)(NFUNC_0075)
必須A
ATDA1
(NRULE_0240)
Gamma-glutamylanilide synthetase
ATDA3
(NRULE_0357)
Aniline dioxygenase large subunit
ATDA4
(NRULE_0358)
Aniline dioxygenase small subunit
任意 
ATDA2
(NRULE_0241)
Putative gamma-glutamylanilide hydrolase
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_5549 Rmet_5517 Rmet_3630 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1326 Rmet_1311 Rmet_0543 Rmet_4932 Rmet_4884
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_3230 Rmet_4882 Rmet_5548 Rmet_5546 Rmet_1314 Rmet_1812 Rmet_2437 Rmet_2618
 
FDR2
(NRULE_0057)
Ferredoxin reductase
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseRmet_3179
TRPE
(NRULE_0143)
Anthranilate synthase component IRmet_3178
Anthranilate degradation (via hydroxylation)(NFUNC_0018)
必須A
ANTA
(NRULE_0044)
Anthranilate 1,2-dioxygenase large subunit
ANTB
(NRULE_0045)
Anthranilate 1,2-dioxygenase small subunit
任意 
ANTC
(NRULE_0081)
Anthranilate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_1326 Rmet_3630 Rmet_4884 Rmet_4932 Rmet_5517 Rmet_5549 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1311 Rmet_0543
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_2437 Rmet_1314 Rmet_2618 Rmet_1812 Rmet_5548 Rmet_5546 Rmet_4882 Rmet_3230
 
FDR2
(NRULE_0057)
Ferredoxin reductase
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseRmet_3926
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseRmet_1590 Rmet_3438
B
AZR
(NRULE_0237)
NADPH azoreductase
C
AZOB
(NRULE_0238)
NAD(P)H azoreductase
Aromatic hydrocarbon degradation (via hydroxylation by dioxygenase)(NFUNC_0016)
必須A
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitRmet_4882 Rmet_2618
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunitRmet_4883
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_4932 Rmet_5549 Rmet_5517 Rmet_0543 Rmet_1311 Rmet_1326 Rmet_1782 Rmet_2861 Rmet_3373 Rmet_3630 Rmet_4884
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_5546 Rmet_4882 Rmet_5548 Rmet_1314 Rmet_1812 Rmet_2437 Rmet_2618 Rmet_3230
 
FDR2
(NRULE_0057)
Ferredoxin reductase
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC1
(NRULE_0017)
Arsenate reductaseRmet_3436 Rmet_0329
B
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC2
(NRULE_0018)
Arsenate reductaseRmet_0331
C
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC3
(NRULE_0019)
Arsenate reductase
D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRmet_0330
ARSC1
(NRULE_0017)
Arsenate reductaseRmet_3436 Rmet_0329
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRmet_0330
ARSC2
(NRULE_0018)
Arsenate reductaseRmet_0331
F
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRmet_0330
ARSC3
(NRULE_0019)
Arsenate reductase
任意 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPase
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsD
 
ARSH
(NRULE_0021)
ArsH proteinRmet_0328
Artificial lacto-N-biose biosynthesis(NFUNC_0026)
必須A
SP
(NRULE_0109)
Sucrose phosphorylase
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferase
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseRmet_3676
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRmet_2705
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitRmet_4882
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitRmet_4883
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseRmet_4885
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentRmet_4884
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_1311 Rmet_5549 Rmet_4932 Rmet_4884 Rmet_3630 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1326 Rmet_5517 Rmet_0543
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_5548 Rmet_5546 Rmet_2618 Rmet_2437 Rmet_1812 Rmet_1314 Rmet_4882 Rmet_3230
 
FDR2
(NRULE_0057)
Ferredoxin reductase
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class A
B
BLAB
(NRULE_0123)
Metallo-beta-lactamase
C
BLAC
(NRULE_0124)
Beta-lactamase class CRmet_1776
D
BLAD
(NRULE_0125)
Beta-lactamase class D
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseRmet_1017 Rmet_2701
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseRmet_3823
C
PHAZ3
(NRULE_0088)
Poly(3-hydroxyalkanoate) depolymerase
任意 
PHAY
(NRULE_0022)
D-(-)-3-hydroxybutyrate oligomer hydrolaseRmet_1960
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseRmet_1356 Rmet_1671
B
PHAE
(NRULE_0012)
Poly(3-hydroxyalkanoate) polymerase PhaE subunit
PHAC2
(NRULE_0373)
Poly(3-hydroxyalkanoate) polymerase PhaC subunit
C
PHAR
(NRULE_0013)
Poly(3-hydroxyalkanoate) polymerase PhaR subunit
PHAC2
(NRULE_0373)
Poly(3-hydroxyalkanoate) polymerase PhaC subunit
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseRmet_1333 Rmet_1358 Rmet_5123
 
PHAP1
(NRULE_0374)
PhasinRmet_1200 Rmet_5043
 
PHAP2
(NRULE_0375)
Phasin
 
PHAP3
(NRULE_0376)
Phasin
 
PHAF
(NRULE_0377)
Phasin PhaF
 
PHAI
(NRULE_0378)
Phasin PhaI
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseRmet_0115
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDRmet_0116
BIOB
(NRULE_0185)
Biotin synthaseRmet_0117
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_4881 Rmet_1781
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRmet_4878
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4877 Rmet_4677
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRmet_4875 Rmet_0084 Rmet_4016 Rmet_4676
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_3667 Rmet_5059
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_5060 Rmet_3668
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_4881 Rmet_1781
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4677 Rmet_4877
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRmet_0084 Rmet_4875 Rmet_4016 Rmet_4676
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_3667 Rmet_5059
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
CATB1
(NRULE_0386)
Muconate cycloisomeraseRmet_4878
C
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_1781 Rmet_4881
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4877 Rmet_4677
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_5059 Rmet_3667
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_5060 Rmet_3668
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
CATB1
(NRULE_0386)
Muconate cycloisomeraseRmet_4878
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_1781 Rmet_4881
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRmet_4878
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4677 Rmet_4877
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_5059 Rmet_3667
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CRmet_1776
任意 
BLAA
(NRULE_0122)
Beta-lactamase class A
 
BLAB
(NRULE_0123)
Metallo-beta-lactamase
Chlorocatechol degradation (beta-ketoadipate pathway)(NFUNC_0104)
必須A
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_3667 Rmet_5059
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_5060 Rmet_3668
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseRmet_4182 Rmet_5282 Rmet_5312 Rmet_0047 Rmet_0112 Rmet_2622 Rmet_3321 Rmet_3645 Rmet_5227
CLCE
(NRULE_0384)
Maleylacetate reductaseRmet_5063
CLCB
(NRULE_0387)
Chloromuconate cycloisomerase
B
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRmet_4878
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_3667 Rmet_5059
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseRmet_5227 Rmet_0047 Rmet_0112 Rmet_2622 Rmet_3321 Rmet_3645 Rmet_4182 Rmet_5282 Rmet_5312
CLCE
(NRULE_0384)
Maleylacetate reductaseRmet_5063
任意 
CLCF
(NRULE_0385)
Chloromuconolactone dehalogenase
Dibenzothiophene degradation (via desulfurization)(NFUNC_0029)
必須A
DSZA
(NRULE_0103)
Dibenzothiophene-5,5-dioxide monooxygenase
DSZB
(NRULE_0104)
2'-hydroxybiphenyl-2-sulfinate desulfinase
DSZC
(NRULE_0105)
Dibenzothiophene monooxygenase
任意 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRmet_3318 Rmet_2646 Rmet_2978
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
必須A
EDIO
(NRULE_0058)
extradiol dioxygenaseRmet_1324 Rmet_3709 Rmet_3401
METAH
(NRULE_0059)
meta-cleavage compound hydrolaseRmet_1306
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseRmet_1321
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseRmet_1319 Rmet_5209
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseRmet_5208 Rmet_1320
B
EDIO
(NRULE_0058)
extradiol dioxygenaseRmet_3709 Rmet_1324 Rmet_3401
2HMSD
(NRULE_0060)
2-hydroxymuconic semialdehyde dehydrogenaseRmet_5206 Rmet_1322
4OT
(NRULE_0061)
4-oxalocrotonate tautomeraseRmet_1317 Rmet_0808
4OD
(NRULE_0062)
4-oxalocrotonate decarboxylaseRmet_1318
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseRmet_1321
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseRmet_1319 Rmet_5209
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseRmet_1320 Rmet_5208
Extracellular electron transfer system(NFUNC_0098)
必須A
NAPC
(NRULE_0333)
Multiheme c-type cytochromeRmet_4061
MTRC
(NRULE_0334)
OmcA/MtrC family decaheme c-type cytochrome
MTRA
(NRULE_0335)
MtrA/DmsE family decaheme c-type cytochrome
MTRB
(NRULE_0336)
Outer membrane protein MtrB homolog
Folate biosynthesis(NFUNC_0044)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseRmet_3179
DHPS
(NRULE_0144)
Dihydropteroate synthaseRmet_2187
FOLM
(NRULE_0146)
Dihydrofolate reductase FolM
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseRmet_0183
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseRmet_2915
FOLC
(NRULE_0160)
Bifunctional protein FolCRmet_2463
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IRmet_2920
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseRmet_3179
DHPS
(NRULE_0144)
Dihydropteroate synthaseRmet_2187
FOLA
(NRULE_0147)
Dihydrofolate reductaseRmet_2569
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseRmet_0183
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseRmet_2915
FOLC
(NRULE_0160)
Bifunctional protein FolCRmet_2463
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IRmet_2920
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
C
GLAT
(NRULE_0142)
Glutamine amidotransferaseRmet_3179
DHPS
(NRULE_0144)
Dihydropteroate synthaseRmet_2187
DFR2
(NRULE_0148)
Dihydrofolate reductase type 2
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseRmet_0183
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseRmet_2915
FOLC
(NRULE_0160)
Bifunctional protein FolCRmet_2463
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IRmet_2920
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseRmet_1766
Haloalkane degradation (conversion into hydroxyacid)(NFUNC_0010)
必須A
DHAA
(NRULE_0050)
Haloalkane dehalogenase
HAD
(NRULE_0051)
(S)-2-haloacid dehalogenaseRmet_1389
B
DHAA
(NRULE_0050)
Haloalkane dehalogenase
DEH
(NRULE_0075)
Haloacetate dehalogenase
Human milk oligosaccharides metabolism(NFUNC_0083)
必須A
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
任意 
NAHK
(NRULE_0256)
N-acetylhexosamine 1-kinase
 
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferase
 
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseRmet_3676
4-hydroxyphenylacetate degradation(NFUNC_0068)
必須A
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseRmet_4733
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
B
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseRmet_4733
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRmet_2978 Rmet_3318 Rmet_2646
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseRmet_4733
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
D
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRmet_2978 Rmet_3318 Rmet_2646
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseRmet_4733
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
E
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRmet_3318 Rmet_2646 Rmet_2978
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseRmet_4733
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
F
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRmet_2978 Rmet_3318 Rmet_2646
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseRmet_4733
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
G
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseRmet_4733
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
H
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseRmet_4733
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseRmet_6174 Rmet_6183
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRmet_0567 Rmet_2234 Rmet_5121
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorRmet_0567
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRmet_0571
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntR
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRRmet_3523
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRRmet_4538
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntR
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikR
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRRmet_1024
J
SMTA
(NRULE_0009)
Metallothionein
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRmet_0571
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorRmet_0567
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRmet_0570
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding protein
Mycosamine biosynthesis(NFUNC_0095)
必須A
AMPHDII
(NRULE_0342)
GDP-3-keto-6-deoxy-D-mannose C-3 aminotransferase
GMD
(NRULE_0343)
GDP-mannose 4,6-dehydrataseRmet_5860
任意 
AMPHDI
(NRULE_0341)
GDP-mycosamine glycosyltransferase
Naphthalene degradation (via hydroxylation by dioxygenase)(NFUNC_0067)
必須A
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitRmet_4882 Rmet_2618
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunitRmet_4883
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenaseRmet_1324 Rmet_3709 Rmet_3401
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAHG
(NRULE_0190)
Salicylate hydroxylase
B
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitRmet_2618 Rmet_4882
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunitRmet_4883
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenaseRmet_3401 Rmet_1324 Rmet_3709
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAGG
(NRULE_0191)
Salicylate 5-hydroxylase alpha subunit
NAGH
(NRULE_0192)
Salicylate 5-hydroxylase beta subunit
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_4932 Rmet_0543 Rmet_1311 Rmet_1326 Rmet_1782 Rmet_5549 Rmet_5517 Rmet_2861 Rmet_3373 Rmet_3630 Rmet_4884
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_5546 Rmet_2618 Rmet_3230 Rmet_4882 Rmet_5548 Rmet_1314 Rmet_1812 Rmet_2437
 
FDR2
(NRULE_0057)
Ferredoxin reductase
Nitrile hydratase(NFUNC_0002)
必須A
NHAA
(NRULE_0001)
Nitrile hydratase subunit alpha
NHAB
(NRULE_0002)
Nitrile hydratase subunit beta
任意 
P14K
(NRULE_0006)
Nitrile hydratase activator P14K
 
COBW
(NRULE_0007)
CobW/P47K family proteinRmet_1098 Rmet_0125 Rmet_0127
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylase
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseRmet_2917
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseRmet_5770 Rmet_4356
PANC
(NRULE_0118)
Pantothenate synthetaseRmet_2774
Phenol degradation(NFUNC_0028)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRmet_1784 Rmet_1316 Rmet_1312 Rmet_1786 Rmet_1328 Rmet_1330
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRmet_1786 Rmet_1316 Rmet_1784 Rmet_1312 Rmet_1330 Rmet_1328
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitRmet_1327 Rmet_1783
B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylase
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylase
任意 
FDR2
(NRULE_0057)
Ferredoxin reductase
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_0543 Rmet_1311 Rmet_1326 Rmet_5517 Rmet_1782 Rmet_4932 Rmet_4884 Rmet_2861 Rmet_3630 Rmet_3373 Rmet_5549
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRmet_1785 Rmet_1313 Rmet_1329
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_5548 Rmet_1812 Rmet_3230 Rmet_1314 Rmet_4882 Rmet_5546 Rmet_2437 Rmet_2618
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRmet_3318 Rmet_2978 Rmet_2646
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRmet_4014
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRmet_4013
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRmet_4015
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseRmet_4016
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRmet_4676 Rmet_4875 Rmet_4016 Rmet_0084
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_5059 Rmet_3667
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_5060 Rmet_3668
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRmet_4014
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRmet_4013
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRmet_4015
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_5059 Rmet_3667
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseRmet_2693 Rmet_4758
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Rmet_0194 Rmet_2693 Rmet_4572
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDRmet_2688
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseRmet_2694
RIBE
(NRULE_0204)
Riboflavin synthaseRmet_2689
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFRmet_2884
Toluene degradation (conversion into protocatechuate via p-cresol)(NFUNC_0007)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRmet_1312 Rmet_1316 Rmet_1328 Rmet_1330 Rmet_1784 Rmet_1786
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRmet_1312 Rmet_1330 Rmet_1784 Rmet_1786 Rmet_1316 Rmet_1328
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_5517 Rmet_5549 Rmet_4932 Rmet_4884 Rmet_3630 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1326 Rmet_1311 Rmet_0543
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRmet_1785 Rmet_1313 Rmet_1329
PCHF
(NRULE_0035)
4-cresol dehydrogenase flavoprotein subunit
PCHC
(NRULE_0036)
4-cresol dehydrogenase cytochrome c subunit
PCHA
(NRULE_0037)
p-hydroxybenzaldehyde dehydrogenase
POBA
(NRULE_0038)
p-hydroxybenzoate hydroxylaseRmet_4018
任意 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitRmet_1327 Rmet_1783
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunitRmet_1315
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_4882 Rmet_1812 Rmet_2437 Rmet_2618 Rmet_5548 Rmet_1314 Rmet_3230 Rmet_5546
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseRmet_0357
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseRmet_0355
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding protein
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease protein
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinRmet_0802
B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding protein
EHUC
(NRULE_0217)
Ectoine ABC transporter permease protein
EHUD
(NRULE_0218)
Ectoine ABC transporter permease protein
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding protein
C
BCCT
(NRULE_0220)
BCCT family transporter
D
PROP
(NRULE_0221)
Osmoprotectant transporter
E
OPUE
(NRULE_0222)
Sodium/proline symporter
F
TEAA
(NRULE_0223)
TRAP transporter substrate-binding protein TeaA
TEAB
(NRULE_0224)
TRAP transporter small transmembrane protein TeaB
TEAC
(NRULE_0225)
TRAP transporter large transmembrane protein TeaC
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenase
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenase
SERC
(NRULE_0210)
Phosphoserine aminotransferaseRmet_0715
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseRmet_2590 Rmet_0438
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseRmet_2415