Acid resistance (by GABA antiporter)(NFUNC_0071) |
必須 | A | GAD (NRULE_0231) | Glutamate decarboxylase | Rmet_1766 |
GADC (NRULE_0234) | Glutamate/gamma-aminobutyrate antiporter | |
Alanine racemization(NFUNC_0063) |
必須 | A | ALR (NRULE_0228) | Alanine racemase | Rmet_1400 |
n-alkane hydroxylation(NFUNC_0008) |
必須 | A | CYP153 (NRULE_0041) | Cytochrome P450 CYP153 | |
B | ALKB (NRULE_0024) | Alkane 1-monooxygenase | |
C | MMA (NRULE_0027) | Multicomponent monooxygenase alpha subunit | Rmet_1784 Rmet_1330 Rmet_1328 Rmet_1316 Rmet_1312 Rmet_1786 |
MMB (NRULE_0028) | Multicomponent monooxygenase beta subunit | Rmet_1786 Rmet_1312 Rmet_1316 Rmet_1328 Rmet_1330 Rmet_1784 |
FDR1 (NRULE_0032) | Oxygenase electron transfer component | Rmet_1326 Rmet_0543 Rmet_4932 Rmet_5549 Rmet_5517 Rmet_4884 Rmet_3630 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1311 |
MME (NRULE_0033) | Multicomponent monooxygenase effector protein | Rmet_1313 Rmet_1329 Rmet_1785 |
任意 | | RUBA (NRULE_0039) | Rubredoxin | Rmet_0668 Rmet_1289 Rmet_3710 Rmet_3952 |
| RUBB (NRULE_0040) | Rubredoxin reductase | |
| MMG1 (NRULE_0029) | Multicomponent monooxygenase gamma subunit | Rmet_1327 Rmet_1783 |
| MMG2 (NRULE_0030) | Multicomponent monooxygenase gamma subunit | Rmet_1315 |
| MMG3 (NRULE_0031) | Multicomponent monooxygenase gamma subunit | |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | Rmet_1314 Rmet_1812 Rmet_2437 Rmet_2618 Rmet_3230 Rmet_4882 Rmet_5546 Rmet_5548 |
Aniline degradation (conversion into catechol)(NFUNC_0075) |
必須 | A | ATDA1 (NRULE_0240) | Gamma-glutamylanilide synthetase | |
ATDA3 (NRULE_0357) | Aniline dioxygenase large subunit | |
ATDA4 (NRULE_0358) | Aniline dioxygenase small subunit | |
任意 | | ATDA2 (NRULE_0241) | Putative gamma-glutamylanilide hydrolase | |
| FDR1 (NRULE_0032) | Oxygenase electron transfer component | Rmet_5549 Rmet_5517 Rmet_3630 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1326 Rmet_1311 Rmet_0543 Rmet_4932 Rmet_4884 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | Rmet_3230 Rmet_4882 Rmet_5548 Rmet_5546 Rmet_1314 Rmet_1812 Rmet_2437 Rmet_2618 |
| FDR2 (NRULE_0057) | Ferredoxin reductase | |
Anthranilate biosynthesis(NFUNC_0038) |
必須 | A | GLAT (NRULE_0142) | Glutamine amidotransferase | Rmet_3179 |
TRPE (NRULE_0143) | Anthranilate synthase component I | Rmet_3178 |
Anthranilate degradation (via hydroxylation)(NFUNC_0018) |
必須 | A | ANTA (NRULE_0044) | Anthranilate 1,2-dioxygenase large subunit | |
ANTB (NRULE_0045) | Anthranilate 1,2-dioxygenase small subunit | |
任意 | | ANTC (NRULE_0081) | Anthranilate 1,2-dioxygenase electron transfer component | |
| FDR1 (NRULE_0032) | Oxygenase electron transfer component | Rmet_1326 Rmet_3630 Rmet_4884 Rmet_4932 Rmet_5517 Rmet_5549 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1311 Rmet_0543 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | Rmet_2437 Rmet_1314 Rmet_2618 Rmet_1812 Rmet_5548 Rmet_5546 Rmet_4882 Rmet_3230 |
| FDR2 (NRULE_0057) | Ferredoxin reductase | |
Arginine degradation(NFUNC_0074) |
必須 | A | ARGI (NRULE_0239) | Arginase | Rmet_3926 |
Aromatic azo compounds degradation(NFUNC_0073) |
必須 | A | AZOR (NRULE_0236) | FMN-dependent NADH-azoreductase | Rmet_1590 Rmet_3438 |
B | AZR (NRULE_0237) | NADPH azoreductase | |
C | AZOB (NRULE_0238) | NAD(P)H azoreductase | |
Aromatic hydrocarbon degradation (via hydroxylation by dioxygenase)(NFUNC_0016) |
必須 | A | RHDA (NRULE_0048) | Ring-hydroxylating dioxygenase alpha subunit | Rmet_4882 Rmet_2618 |
RHDB (NRULE_0049) | Ring-hydroxylating dioxygenase beta subunit | Rmet_4883 |
CDDH (NRULE_0056) | Cis-dihydrodiol dehydrogenase | |
任意 | | FDR1 (NRULE_0032) | Oxygenase electron transfer component | Rmet_4932 Rmet_5549 Rmet_5517 Rmet_0543 Rmet_1311 Rmet_1326 Rmet_1782 Rmet_2861 Rmet_3373 Rmet_3630 Rmet_4884 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | Rmet_5546 Rmet_4882 Rmet_5548 Rmet_1314 Rmet_1812 Rmet_2437 Rmet_2618 Rmet_3230 |
| FDR2 (NRULE_0057) | Ferredoxin reductase | |
Arsenical resistance(NFUNC_0004) |
必須 | A | ARSB1 (NRULE_0015) | Arsenical pump membrane protein | |
ARSC1 (NRULE_0017) | Arsenate reductase | Rmet_3436 Rmet_0329 |
B | ARSB1 (NRULE_0015) | Arsenical pump membrane protein | |
ARSC2 (NRULE_0018) | Arsenate reductase | Rmet_0331 |
C | ARSB1 (NRULE_0015) | Arsenical pump membrane protein | |
ARSC3 (NRULE_0019) | Arsenate reductase | |
D | ARSB2 (NRULE_0016) | Arsenite resistance protein ArsB | Rmet_0330 |
ARSC1 (NRULE_0017) | Arsenate reductase | Rmet_3436 Rmet_0329 |
E | ARSB2 (NRULE_0016) | Arsenite resistance protein ArsB | Rmet_0330 |
ARSC2 (NRULE_0018) | Arsenate reductase | Rmet_0331 |
F | ARSB2 (NRULE_0016) | Arsenite resistance protein ArsB | Rmet_0330 |
ARSC3 (NRULE_0019) | Arsenate reductase | |
任意 | | ARSA (NRULE_0014) | Arsenical pump-driving ATPase | |
| ARSD (NRULE_0020) | Arsenical resistance operon trans-acting repressor ArsD | |
| ARSH (NRULE_0021) | ArsH protein | Rmet_0328 |
Artificial lacto-N-biose biosynthesis(NFUNC_0026) |
必須 | A | SP (NRULE_0109) | Sucrose phosphorylase | |
GALT (NRULE_0110) | Galactose-1-phosphate uridylyltransferase | |
GALE (NRULE_0111) | UDP-glucose 4-epimerase | Rmet_3676 |
LNBP (NRULE_0112) | 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase | |
Bacitracin resistance(NFUNC_0022) |
必須 | A | UPPP (NRULE_0097) | Undecaprenyl-diphosphatase | Rmet_2705 |
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017) |
必須 | A | BENA (NRULE_0046) | Benzoate 1,2-dioxygenase alpha subunit | Rmet_4882 |
BENB (NRULE_0047) | Benzoate 1,2-dioxygenase beta subunit | Rmet_4883 |
BEND (NRULE_0082) | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase | Rmet_4885 |
任意 | | BENC (NRULE_0055) | Benzoate 1,2-dioxygenase electron transfer component | Rmet_4884 |
| FDR1 (NRULE_0032) | Oxygenase electron transfer component | Rmet_1311 Rmet_5549 Rmet_4932 Rmet_4884 Rmet_3630 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1326 Rmet_5517 Rmet_0543 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | Rmet_5548 Rmet_5546 Rmet_2618 Rmet_2437 Rmet_1812 Rmet_1314 Rmet_4882 Rmet_3230 |
| FDR2 (NRULE_0057) | Ferredoxin reductase | |
Beta-lactam antibiotic resistance(NFUNC_0033) |
必須 | A | BLAA (NRULE_0122) | Beta-lactamase class A | |
B | BLAB (NRULE_0123) | Metallo-beta-lactamase | |
C | BLAC (NRULE_0124) | Beta-lactamase class C | Rmet_1776 |
D | BLAD (NRULE_0125) | Beta-lactamase class D | |
Bioplastic degradation(NFUNC_0015) |
必須 | A | PHAZ1 (NRULE_0023) | Intracellular poly(3-hydroxyalkanoate) depolymerase | Rmet_1017 Rmet_2701 |
B | PHAZ2 (NRULE_0080) | Poly(3-hydroxyalkanoate) depolymerase | Rmet_3823 |
C | PHAZ3 (NRULE_0088) | Poly(3-hydroxyalkanoate) depolymerase | |
任意 | | PHAY (NRULE_0022) | D-(-)-3-hydroxybutyrate oligomer hydrolase | Rmet_1960 |
Bioplastic synthesis(NFUNC_0001) |
必須 | A | PHAC1 (NRULE_0010) | Poly(3-hydroxyalkanoate) polymerase | Rmet_1356 Rmet_1671 |
B | PHAE (NRULE_0012) | Poly(3-hydroxyalkanoate) polymerase PhaE subunit | |
PHAC2 (NRULE_0373) | Poly(3-hydroxyalkanoate) polymerase PhaC subunit | |
C | PHAR (NRULE_0013) | Poly(3-hydroxyalkanoate) polymerase PhaR subunit | |
PHAC2 (NRULE_0373) | Poly(3-hydroxyalkanoate) polymerase PhaC subunit | |
任意 | | PHAB (NRULE_0011) | Acetoacetyl-CoA reductase | Rmet_1333 Rmet_1358 Rmet_5123 |
| PHAP1 (NRULE_0374) | Phasin | Rmet_1200 Rmet_5043 |
| PHAP2 (NRULE_0375) | Phasin | |
| PHAP3 (NRULE_0376) | Phasin | |
| PHAF (NRULE_0377) | Phasin PhaF | |
| PHAI (NRULE_0378) | Phasin PhaI | |
Biotin biosynthesis(NFUNC_0051) |
必須 | A | BIOF (NRULE_0182) | 8-amino-7-oxononanoate synthase | Rmet_0115 |
BIOA (NRULE_0183) | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | |
BIOD (NRULE_0184) | ATP-dependent dethiobiotin synthetase BioD | Rmet_0116 |
BIOB (NRULE_0185) | Biotin synthase | Rmet_0117 |
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013) |
必須 | A | CATA (NRULE_0052) | Catechol 1,2-dioxygenase | Rmet_4881 Rmet_1781 |
CATB2 (NRULE_0053) | (Chloro)muconate cycloisomerase | Rmet_4878 |
CATC (NRULE_0054) | Muconolactone isomerase | Rmet_4877 Rmet_4677 |
PCAD (NRULE_0070) | 3-oxoadipate enol-lactonase | Rmet_4875 Rmet_0084 Rmet_4016 Rmet_4676 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | Rmet_3667 Rmet_5059 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | Rmet_5060 Rmet_3668 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | Rmet_3669 |
B | CATA (NRULE_0052) | Catechol 1,2-dioxygenase | Rmet_4881 Rmet_1781 |
CATC (NRULE_0054) | Muconolactone isomerase | Rmet_4677 Rmet_4877 |
PCAD (NRULE_0070) | 3-oxoadipate enol-lactonase | Rmet_0084 Rmet_4875 Rmet_4016 Rmet_4676 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | Rmet_3667 Rmet_5059 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | Rmet_3668 Rmet_5060 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | Rmet_3669 |
CATB1 (NRULE_0386) | Muconate cycloisomerase | Rmet_4878 |
C | CATA (NRULE_0052) | Catechol 1,2-dioxygenase | Rmet_1781 Rmet_4881 |
CATC (NRULE_0054) | Muconolactone isomerase | Rmet_4877 Rmet_4677 |
PCAL (NRULE_0071) | 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase | Rmet_4016 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | Rmet_5059 Rmet_3667 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | Rmet_5060 Rmet_3668 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | Rmet_3669 |
CATB1 (NRULE_0386) | Muconate cycloisomerase | Rmet_4878 |
D | CATA (NRULE_0052) | Catechol 1,2-dioxygenase | Rmet_1781 Rmet_4881 |
CATB2 (NRULE_0053) | (Chloro)muconate cycloisomerase | Rmet_4878 |
CATC (NRULE_0054) | Muconolactone isomerase | Rmet_4677 Rmet_4877 |
PCAL (NRULE_0071) | 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase | Rmet_4016 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | Rmet_5059 Rmet_3667 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | Rmet_3668 Rmet_5060 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | Rmet_3669 |
Cephalosporin resistance(NFUNC_0048) |
必須 | A | BLAC (NRULE_0124) | Beta-lactamase class C | Rmet_1776 |
任意 | | BLAA (NRULE_0122) | Beta-lactamase class A | |
| BLAB (NRULE_0123) | Metallo-beta-lactamase | |
Chlorocatechol degradation (beta-ketoadipate pathway)(NFUNC_0104) |
必須 | A | PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | Rmet_3667 Rmet_5059 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | Rmet_5060 Rmet_3668 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | Rmet_3669 |
CLCA (NRULE_0382) | Chlorocatechol 1,2-dioxygenase | |
CLCD (NRULE_0383) | Dienelactone hydrolase | Rmet_4182 Rmet_5282 Rmet_5312 Rmet_0047 Rmet_0112 Rmet_2622 Rmet_3321 Rmet_3645 Rmet_5227 |
CLCE (NRULE_0384) | Maleylacetate reductase | Rmet_5063 |
CLCB (NRULE_0387) | Chloromuconate cycloisomerase | |
B | CATB2 (NRULE_0053) | (Chloro)muconate cycloisomerase | Rmet_4878 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | Rmet_3667 Rmet_5059 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | Rmet_3668 Rmet_5060 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | Rmet_3669 |
CLCA (NRULE_0382) | Chlorocatechol 1,2-dioxygenase | |
CLCD (NRULE_0383) | Dienelactone hydrolase | Rmet_5227 Rmet_0047 Rmet_0112 Rmet_2622 Rmet_3321 Rmet_3645 Rmet_4182 Rmet_5282 Rmet_5312 |
CLCE (NRULE_0384) | Maleylacetate reductase | Rmet_5063 |
任意 | | CLCF (NRULE_0385) | Chloromuconolactone dehalogenase | |
Dibenzothiophene degradation (via desulfurization)(NFUNC_0029) |
必須 | A | DSZA (NRULE_0103) | Dibenzothiophene-5,5-dioxide monooxygenase | |
DSZB (NRULE_0104) | 2'-hydroxybiphenyl-2-sulfinate desulfinase | |
DSZC (NRULE_0105) | Dibenzothiophene monooxygenase | |
任意 | | FADR1 (NRULE_0101) | NADH-dependent flavin reductase | Rmet_3318 Rmet_2646 Rmet_2978 |
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011) |
必須 | A | EDIO (NRULE_0058) | extradiol dioxygenase | Rmet_1324 Rmet_3709 Rmet_3401 |
METAH (NRULE_0059) | meta-cleavage compound hydrolase | Rmet_1306 |
HPDH (NRULE_0063) | 2-hydroxypent-2,4-dienoate hydratase | Rmet_1321 |
HOA (NRULE_0064) | 4-hydroxy-2-oxovalerate aldolase | Rmet_1319 Rmet_5209 |
ACDH (NRULE_0065) | Acetaldehyde dehydrogenase | Rmet_5208 Rmet_1320 |
B | EDIO (NRULE_0058) | extradiol dioxygenase | Rmet_3709 Rmet_1324 Rmet_3401 |
2HMSD (NRULE_0060) | 2-hydroxymuconic semialdehyde dehydrogenase | Rmet_5206 Rmet_1322 |
4OT (NRULE_0061) | 4-oxalocrotonate tautomerase | Rmet_1317 Rmet_0808 |
4OD (NRULE_0062) | 4-oxalocrotonate decarboxylase | Rmet_1318 |
HPDH (NRULE_0063) | 2-hydroxypent-2,4-dienoate hydratase | Rmet_1321 |
HOA (NRULE_0064) | 4-hydroxy-2-oxovalerate aldolase | Rmet_1319 Rmet_5209 |
ACDH (NRULE_0065) | Acetaldehyde dehydrogenase | Rmet_1320 Rmet_5208 |
Extracellular electron transfer system(NFUNC_0098) |
必須 | A | NAPC (NRULE_0333) | Multiheme c-type cytochrome | Rmet_4061 |
MTRC (NRULE_0334) | OmcA/MtrC family decaheme c-type cytochrome | |
MTRA (NRULE_0335) | MtrA/DmsE family decaheme c-type cytochrome | |
MTRB (NRULE_0336) | Outer membrane protein MtrB homolog | |
Folate biosynthesis(NFUNC_0044) |
必須 | A | GLAT (NRULE_0142) | Glutamine amidotransferase | Rmet_3179 |
DHPS (NRULE_0144) | Dihydropteroate synthase | Rmet_2187 |
FOLM (NRULE_0146) | Dihydrofolate reductase FolM | |
FOLB (NRULE_0158) | Dihydroneopterin aldolase | Rmet_0183 |
FOLK (NRULE_0159) | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | Rmet_2915 |
FOLC (NRULE_0160) | Bifunctional protein FolC | Rmet_2463 |
PABB (NRULE_0161) | Para-aminobenzoate synthase component I | Rmet_2920 |
PABC (NRULE_0162) | Aminodeoxychorismate lyase | |
B | GLAT (NRULE_0142) | Glutamine amidotransferase | Rmet_3179 |
DHPS (NRULE_0144) | Dihydropteroate synthase | Rmet_2187 |
FOLA (NRULE_0147) | Dihydrofolate reductase | Rmet_2569 |
FOLB (NRULE_0158) | Dihydroneopterin aldolase | Rmet_0183 |
FOLK (NRULE_0159) | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | Rmet_2915 |
FOLC (NRULE_0160) | Bifunctional protein FolC | Rmet_2463 |
PABB (NRULE_0161) | Para-aminobenzoate synthase component I | Rmet_2920 |
PABC (NRULE_0162) | Aminodeoxychorismate lyase | |
C | GLAT (NRULE_0142) | Glutamine amidotransferase | Rmet_3179 |
DHPS (NRULE_0144) | Dihydropteroate synthase | Rmet_2187 |
DFR2 (NRULE_0148) | Dihydrofolate reductase type 2 | |
FOLB (NRULE_0158) | Dihydroneopterin aldolase | Rmet_0183 |
FOLK (NRULE_0159) | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | Rmet_2915 |
FOLC (NRULE_0160) | Bifunctional protein FolC | Rmet_2463 |
PABB (NRULE_0161) | Para-aminobenzoate synthase component I | Rmet_2920 |
PABC (NRULE_0162) | Aminodeoxychorismate lyase | |
GABA biosynthesis(NFUNC_0066) |
必須 | A | GAD (NRULE_0231) | Glutamate decarboxylase | Rmet_1766 |
Haloalkane degradation (conversion into hydroxyacid)(NFUNC_0010) |
必須 | A | DHAA (NRULE_0050) | Haloalkane dehalogenase | |
HAD (NRULE_0051) | (S)-2-haloacid dehalogenase | Rmet_1389 |
B | DHAA (NRULE_0050) | Haloalkane dehalogenase | |
DEH (NRULE_0075) | Haloacetate dehalogenase | |
Human milk oligosaccharides metabolism(NFUNC_0083) |
必須 | A | LNBP (NRULE_0112) | 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase | |
任意 | | NAHK (NRULE_0256) | N-acetylhexosamine 1-kinase | |
| GALT (NRULE_0110) | Galactose-1-phosphate uridylyltransferase | |
| GALE (NRULE_0111) | UDP-glucose 4-epimerase | Rmet_3676 |
4-hydroxyphenylacetate degradation(NFUNC_0068) |
必須 | A | HPAB1 (NRULE_0085) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
HPAC (NRULE_0102) | 4-hydroxyphenylacetate 3-monooxygenase reductase component | |
HPAD1 (NRULE_0193) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | Rmet_4733 |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
B | HPAB1 (NRULE_0085) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
HPAC (NRULE_0102) | 4-hydroxyphenylacetate 3-monooxygenase reductase component | |
HPAD2 (NRULE_0194) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | Rmet_4733 |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
C | HPAB1 (NRULE_0085) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
FADR1 (NRULE_0101) | NADH-dependent flavin reductase | Rmet_2978 Rmet_3318 Rmet_2646 |
HPAD1 (NRULE_0193) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | Rmet_4733 |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
D | HPAB1 (NRULE_0085) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
FADR1 (NRULE_0101) | NADH-dependent flavin reductase | Rmet_2978 Rmet_3318 Rmet_2646 |
HPAD2 (NRULE_0194) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | Rmet_4733 |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
E | HPAB2 (NRULE_0086) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
FADR1 (NRULE_0101) | NADH-dependent flavin reductase | Rmet_3318 Rmet_2646 Rmet_2978 |
HPAD2 (NRULE_0194) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | Rmet_4733 |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
F | HPAB2 (NRULE_0086) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
FADR1 (NRULE_0101) | NADH-dependent flavin reductase | Rmet_2978 Rmet_3318 Rmet_2646 |
HPAD1 (NRULE_0193) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | Rmet_4733 |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
G | HPAB2 (NRULE_0086) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
HPAC (NRULE_0102) | 4-hydroxyphenylacetate 3-monooxygenase reductase component | |
HPAD2 (NRULE_0194) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | Rmet_4733 |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
H | HPAB2 (NRULE_0086) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
HPAC (NRULE_0102) | 4-hydroxyphenylacetate 3-monooxygenase reductase component | |
HPAD1 (NRULE_0193) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | Rmet_4733 |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
Mercury resistance(NFUNC_0005) |
必須 | A | MERA (NRULE_0008) | Mercuric reductase | Rmet_6174 Rmet_6183 |
Metal-binding protein(NFUNC_0105) |
必須 | A | MOP (NRULE_0322) | Putative molybdenum-binding protein | Rmet_0567 Rmet_2234 Rmet_5121 |
B | MODE (NRULE_0323) | Putative molybdate-dependent transcriptional regulator | Rmet_0567 |
C | MODA (NRULE_0324) | Molybdate ABC transporter substrate-binding protein | Rmet_0571 |
D | MNTR (NRULE_0327) | DtxR family transcriptional regulator MntR | |
E | CUER (NRULE_0328) | Copper-responsive transcriptional regulator CueR | Rmet_3523 |
F | SOXR (NRULE_0329) | Redox-sensitive transcriptional activator SoxR | Rmet_4538 |
G | ZNTR (NRULE_0330) | Zinc-responsive transcriptional regulator ZntR | |
H | NIKR (NRULE_0331) | Nickel-responsive transcriptional regulator NikR | |
I | ISCR (NRULE_0332) | Rrf2 family transcriptional regulator IscR | Rmet_1024 |
J | SMTA (NRULE_0009) | Metallothionein | |
Molybdate transport (ABC transporter)(NFUNC_0097) |
必須 | A | MODA (NRULE_0324) | Molybdate ABC transporter substrate-binding protein | Rmet_0571 |
任意 | | MODE (NRULE_0323) | Putative molybdate-dependent transcriptional regulator | Rmet_0567 |
| MODB (NRULE_0325) | Molybdate ABC transporter permease protein | Rmet_0570 |
| MODC (NRULE_0326) | Molybdate ABC transporter ATP-binding protein | |
Mycosamine biosynthesis(NFUNC_0095) |
必須 | A | AMPHDII (NRULE_0342) | GDP-3-keto-6-deoxy-D-mannose C-3 aminotransferase | |
GMD (NRULE_0343) | GDP-mannose 4,6-dehydratase | Rmet_5860 |
任意 | | AMPHDI (NRULE_0341) | GDP-mycosamine glycosyltransferase | |
Naphthalene degradation (via hydroxylation by dioxygenase)(NFUNC_0067) |
必須 | A | RHDA (NRULE_0048) | Ring-hydroxylating dioxygenase alpha subunit | Rmet_4882 Rmet_2618 |
RHDB (NRULE_0049) | Ring-hydroxylating dioxygenase beta subunit | Rmet_4883 |
CDDH (NRULE_0056) | Cis-dihydrodiol dehydrogenase | |
EDIO (NRULE_0058) | extradiol dioxygenase | Rmet_1324 Rmet_3709 Rmet_3401 |
NAHD (NRULE_0171) | 2-hydroxychromene-2-carboxylate isomerase | |
NAHE (NRULE_0172) | Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase | |
NAHF (NRULE_0173) | Salicylaldehyde dehydrogenase | |
NAHG (NRULE_0190) | Salicylate hydroxylase | |
B | RHDA (NRULE_0048) | Ring-hydroxylating dioxygenase alpha subunit | Rmet_2618 Rmet_4882 |
RHDB (NRULE_0049) | Ring-hydroxylating dioxygenase beta subunit | Rmet_4883 |
CDDH (NRULE_0056) | Cis-dihydrodiol dehydrogenase | |
EDIO (NRULE_0058) | extradiol dioxygenase | Rmet_3401 Rmet_1324 Rmet_3709 |
NAHD (NRULE_0171) | 2-hydroxychromene-2-carboxylate isomerase | |
NAHE (NRULE_0172) | Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase | |
NAHF (NRULE_0173) | Salicylaldehyde dehydrogenase | |
NAGG (NRULE_0191) | Salicylate 5-hydroxylase alpha subunit | |
NAGH (NRULE_0192) | Salicylate 5-hydroxylase beta subunit | |
任意 | | FDR1 (NRULE_0032) | Oxygenase electron transfer component | Rmet_4932 Rmet_0543 Rmet_1311 Rmet_1326 Rmet_1782 Rmet_5549 Rmet_5517 Rmet_2861 Rmet_3373 Rmet_3630 Rmet_4884 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | Rmet_5546 Rmet_2618 Rmet_3230 Rmet_4882 Rmet_5548 Rmet_1314 Rmet_1812 Rmet_2437 |
| FDR2 (NRULE_0057) | Ferredoxin reductase | |
Nitrile hydratase(NFUNC_0002) |
必須 | A | NHAA (NRULE_0001) | Nitrile hydratase subunit alpha | |
NHAB (NRULE_0002) | Nitrile hydratase subunit beta | |
任意 | | P14K (NRULE_0006) | Nitrile hydratase activator P14K | |
| COBW (NRULE_0007) | CobW/P47K family protein | Rmet_1098 Rmet_0125 Rmet_0127 |
(R)-pantothenate biosynthesis(NFUNC_0030) |
必須 | A | PAND (NRULE_0115) | Aspartate 1-decarboxylase | |
PANB (NRULE_0116) | 3-methyl-2-oxobutanoate hydroxymethyltransferase | Rmet_2917 |
PANE (NRULE_0117) | 2-dehydropantoate 2-reductase | Rmet_5770 Rmet_4356 |
PANC (NRULE_0118) | Pantothenate synthetase | Rmet_2774 |
Phenol degradation(NFUNC_0028) |
必須 | A | MMA (NRULE_0027) | Multicomponent monooxygenase alpha subunit | Rmet_1784 Rmet_1316 Rmet_1312 Rmet_1786 Rmet_1328 Rmet_1330 |
MMB (NRULE_0028) | Multicomponent monooxygenase beta subunit | Rmet_1786 Rmet_1316 Rmet_1784 Rmet_1312 Rmet_1330 Rmet_1328 |
MMG1 (NRULE_0029) | Multicomponent monooxygenase gamma subunit | Rmet_1327 Rmet_1783 |
B | PHEA1 (NRULE_0083) | Aromatic ring hydroxylase | |
C | PHEA2 (NRULE_0084) | Aromatic ring hydroxylase | |
任意 | | FDR2 (NRULE_0057) | Ferredoxin reductase | |
| FDR1 (NRULE_0032) | Oxygenase electron transfer component | Rmet_0543 Rmet_1311 Rmet_1326 Rmet_5517 Rmet_1782 Rmet_4932 Rmet_4884 Rmet_2861 Rmet_3630 Rmet_3373 Rmet_5549 |
| MME (NRULE_0033) | Multicomponent monooxygenase effector protein | Rmet_1785 Rmet_1313 Rmet_1329 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | Rmet_5548 Rmet_1812 Rmet_3230 Rmet_1314 Rmet_4882 Rmet_5546 Rmet_2437 Rmet_2618 |
| FADR1 (NRULE_0101) | NADH-dependent flavin reductase | Rmet_3318 Rmet_2978 Rmet_2646 |
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014) |
必須 | A | PCAG (NRULE_0066) | Protocatechuate 3,4-dioxygenase alpha subunit | Rmet_4014 |
PCAH (NRULE_0067) | Protocatechuate 3,4-dioxygenase beta subunit | Rmet_4013 |
PCAB (NRULE_0068) | 3-carboxy-cis,cis-muconate cycloisomerase | Rmet_4015 |
PCAC (NRULE_0069) | 4-carboxymuconolactone decarboxylase | Rmet_4016 |
PCAD (NRULE_0070) | 3-oxoadipate enol-lactonase | Rmet_4676 Rmet_4875 Rmet_4016 Rmet_0084 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | Rmet_5059 Rmet_3667 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | Rmet_5060 Rmet_3668 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | Rmet_3669 |
B | PCAG (NRULE_0066) | Protocatechuate 3,4-dioxygenase alpha subunit | Rmet_4014 |
PCAH (NRULE_0067) | Protocatechuate 3,4-dioxygenase beta subunit | Rmet_4013 |
PCAB (NRULE_0068) | 3-carboxy-cis,cis-muconate cycloisomerase | Rmet_4015 |
PCAL (NRULE_0071) | 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase | Rmet_4016 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | Rmet_5059 Rmet_3667 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | Rmet_3668 Rmet_5060 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | Rmet_3669 |
Riboflavin biosynthesis(NFUNC_0058) |
必須 | A | RIBB (NRULE_0200) | 3,4-dihydroxy-2-butanone 4-phosphate synthase | Rmet_2693 Rmet_4758 |
RIBA (NRULE_0201) | GTP cyclohydrolase-2 | Rmet_0194 Rmet_2693 Rmet_4572 |
RIBD (NRULE_0202) | Riboflavin biosynthesis protein RibD | Rmet_2688 |
RIBH (NRULE_0203) | 6,7-dimethyl-8-ribityllumazine synthase | Rmet_2694 |
RIBE (NRULE_0204) | Riboflavin synthase | Rmet_2689 |
任意 | | RIBF (NRULE_0205) | Riboflavin biosynthesis protein RibF | Rmet_2884 |
Toluene degradation (conversion into protocatechuate via p-cresol)(NFUNC_0007) |
必須 | A | MMA (NRULE_0027) | Multicomponent monooxygenase alpha subunit | Rmet_1312 Rmet_1316 Rmet_1328 Rmet_1330 Rmet_1784 Rmet_1786 |
MMB (NRULE_0028) | Multicomponent monooxygenase beta subunit | Rmet_1312 Rmet_1330 Rmet_1784 Rmet_1786 Rmet_1316 Rmet_1328 |
FDR1 (NRULE_0032) | Oxygenase electron transfer component | Rmet_5517 Rmet_5549 Rmet_4932 Rmet_4884 Rmet_3630 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1326 Rmet_1311 Rmet_0543 |
MME (NRULE_0033) | Multicomponent monooxygenase effector protein | Rmet_1785 Rmet_1313 Rmet_1329 |
PCHF (NRULE_0035) | 4-cresol dehydrogenase flavoprotein subunit | |
PCHC (NRULE_0036) | 4-cresol dehydrogenase cytochrome c subunit | |
PCHA (NRULE_0037) | p-hydroxybenzaldehyde dehydrogenase | |
POBA (NRULE_0038) | p-hydroxybenzoate hydroxylase | Rmet_4018 |
任意 | | MMG1 (NRULE_0029) | Multicomponent monooxygenase gamma subunit | Rmet_1327 Rmet_1783 |
| MMG2 (NRULE_0030) | Multicomponent monooxygenase gamma subunit | Rmet_1315 |
| MMG3 (NRULE_0031) | Multicomponent monooxygenase gamma subunit | |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | Rmet_4882 Rmet_1812 Rmet_2437 Rmet_2618 Rmet_5548 Rmet_1314 Rmet_3230 Rmet_5546 |
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031) |
必須 | A | TPS (NRULE_0119) | Trehalose-phosphate synthase | Rmet_0357 |
TPP (NRULE_0120) | Trehalose-6-phosphate phosphatase | Rmet_0355 |
Uptake of osmoprotectant(NFUNC_0061) |
必須 | A | OPUAC (NRULE_0213) | Osmoprotectant ABC transporter substrate-binding protein | |
OPUAB (NRULE_0214) | Osmoprotectant ABC transporter permease protein | |
OPUAA (NRULE_0215) | Osmoprotectant ABC transporter ATP-binding protein | Rmet_0802 |
B | EHUB (NRULE_0216) | Ectoine ABC transporter substrate-binding protein | |
EHUC (NRULE_0217) | Ectoine ABC transporter permease protein | |
EHUD (NRULE_0218) | Ectoine ABC transporter permease protein | |
EHUA (NRULE_0219) | Ectoine ABC transporter ATP-binding protein | |
C | BCCT (NRULE_0220) | BCCT family transporter | |
D | PROP (NRULE_0221) | Osmoprotectant transporter | |
E | OPUE (NRULE_0222) | Sodium/proline symporter | |
F | TEAA (NRULE_0223) | TRAP transporter substrate-binding protein TeaA | |
TEAB (NRULE_0224) | TRAP transporter small transmembrane protein TeaB | |
TEAC (NRULE_0225) | TRAP transporter large transmembrane protein TeaC | |
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060) |
必須 | A | EPD (NRULE_0208) | D-erythrose-4-phosphate dehydrogenase | |
PDXB (NRULE_0209) | Erythronate-4-phosphate dehydrogenase | |
SERC (NRULE_0210) | Phosphoserine aminotransferase | Rmet_0715 |
PDXA (NRULE_0211) | 4-hydroxythreonine-4-phosphate dehydrogenase | Rmet_2590 Rmet_0438 |
PDXJ (NRULE_0212) | Pyridoxine 5'-phosphate synthase | Rmet_2415 |