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推定保有機能 : Rhizobium sp.

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseNGR_b07050 NGR_c08780
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenase
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunit
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunit
FDR1
(NRULE_0032)
Oxygenase electron transfer componentNGR_c26150 NGR_c26310 NGR_c04870 NGR_b07390 NGR_b23420
MME
(NRULE_0033)
Multicomponent monooxygenase effector protein
任意 
RUBA
(NRULE_0039)
Rubredoxin
 
RUBB
(NRULE_0040)
Rubredoxin reductase
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunit
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinNGR_b23520 NGR_b23410 NGR_b17100 NGR_b15340 NGR_b12550 NGR_b11380 NGR_b08230 NGR_b07090 NGR_c26320 NGR_c16730 NGR_c04860
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseNGR_c02420
Aniline degradation (conversion into catechol)(NFUNC_0075)
必須A
ATDA1
(NRULE_0240)
Gamma-glutamylanilide synthetase
ATDA3
(NRULE_0357)
Aniline dioxygenase large subunit
ATDA4
(NRULE_0358)
Aniline dioxygenase small subunit
任意 
ATDA2
(NRULE_0241)
Putative gamma-glutamylanilide hydrolase
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentNGR_b07390 NGR_b23420 NGR_c04870 NGR_c26150 NGR_c26310
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinNGR_b11380 NGR_c26320 NGR_c16730 NGR_c04860 NGR_b23520 NGR_b23410 NGR_b17100 NGR_b15340 NGR_b12550 NGR_b07090 NGR_b08230
 
FDR2
(NRULE_0057)
Ferredoxin reductaseNGR_b07640 NGR_b17090 NGR_b16350 NGR_b14750
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseNGR_c23510
TRPE
(NRULE_0143)
Anthranilate synthase component INGR_c23510
Anthranilate degradation (via hydroxylation)(NFUNC_0018)
必須A
ANTA
(NRULE_0044)
Anthranilate 1,2-dioxygenase large subunit
ANTB
(NRULE_0045)
Anthranilate 1,2-dioxygenase small subunit
任意 
ANTC
(NRULE_0081)
Anthranilate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentNGR_c04870 NGR_b07390 NGR_c26310 NGR_c26150 NGR_b23420
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinNGR_c26320 NGR_c16730 NGR_c04860 NGR_b23520 NGR_b23410 NGR_b17100 NGR_b15340 NGR_b12550 NGR_b11380 NGR_b08230 NGR_b07090
 
FDR2
(NRULE_0057)
Ferredoxin reductaseNGR_b17090 NGR_b16350 NGR_b14750 NGR_b07640
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseNGR_c30820
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseNGR_c11680
B
AZR
(NRULE_0237)
NADPH azoreductase
C
AZOB
(NRULE_0238)
NAD(P)H azoreductase
Aromatic hydrocarbon degradation (via hydroxylation by dioxygenase)(NFUNC_0016)
必須A
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitNGR_c04860 NGR_b23410 NGR_c26320
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunit
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentNGR_c26150 NGR_c26310 NGR_b07390 NGR_b23420 NGR_c04870
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinNGR_c26320 NGR_c16730 NGR_c04860 NGR_b23520 NGR_b23410 NGR_b17100 NGR_b15340 NGR_b12550 NGR_b11380 NGR_b08230 NGR_b07090
 
FDR2
(NRULE_0057)
Ferredoxin reductaseNGR_b17090 NGR_b07640 NGR_b14750 NGR_b16350
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC1
(NRULE_0017)
Arsenate reductaseNGR_b21790
B
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC2
(NRULE_0018)
Arsenate reductaseNGR_b21810
C
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC3
(NRULE_0019)
Arsenate reductase
D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsB
ARSC1
(NRULE_0017)
Arsenate reductaseNGR_b21790
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsB
ARSC2
(NRULE_0018)
Arsenate reductaseNGR_b21810
F
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsB
ARSC3
(NRULE_0019)
Arsenate reductase
任意 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPase
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsD
 
ARSH
(NRULE_0021)
ArsH protein
Artificial lacto-N-biose biosynthesis(NFUNC_0026)
必須A
SP
(NRULE_0109)
Sucrose phosphorylase
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferase
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseNGR_c01880 NGR_b17860 NGR_b18230
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseNGR_c36660
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunit
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunit
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentNGR_b23420 NGR_c04870 NGR_c26150 NGR_b07390 NGR_c26310
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinNGR_b12550 NGR_c26320 NGR_c16730 NGR_c04860 NGR_b23520 NGR_b23410 NGR_b17100 NGR_b15340 NGR_b11380 NGR_b08230 NGR_b07090
 
FDR2
(NRULE_0057)
Ferredoxin reductaseNGR_b17090 NGR_b07640 NGR_b14750 NGR_b16350
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class A
B
BLAB
(NRULE_0123)
Metallo-beta-lactamase
C
BLAC
(NRULE_0124)
Beta-lactamase class CNGR_c32650
D
BLAD
(NRULE_0125)
Beta-lactamase class D
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseNGR_b04630 NGR_c06990
B
GBSB
(NRULE_0176)
Alcohol dehydrogenase
BETB
(NRULE_0177)
Betaine aldehyde dehydrogenaseNGR_c07000
C
CHOX
(NRULE_0178)
Choline oxidase
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseNGR_c33730
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseNGR_b03370
C
PHAZ3
(NRULE_0088)
Poly(3-hydroxyalkanoate) depolymerase
任意 
PHAY
(NRULE_0022)
D-(-)-3-hydroxybutyrate oligomer hydrolase
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseNGR_c14000
B
PHAE
(NRULE_0012)
Poly(3-hydroxyalkanoate) polymerase PhaE subunit
PHAC2
(NRULE_0373)
Poly(3-hydroxyalkanoate) polymerase PhaC subunit
C
PHAR
(NRULE_0013)
Poly(3-hydroxyalkanoate) polymerase PhaR subunit
PHAC2
(NRULE_0373)
Poly(3-hydroxyalkanoate) polymerase PhaC subunit
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseNGR_c32710
 
PHAP1
(NRULE_0374)
PhasinNGR_c13240 NGR_c03360
 
PHAP2
(NRULE_0375)
Phasin
 
PHAP3
(NRULE_0376)
Phasin
 
PHAF
(NRULE_0377)
Phasin PhaF
 
PHAI
(NRULE_0378)
Phasin PhaI
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthase
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseNGR_c25110
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDNGR_c25120
BIOB
(NRULE_0185)
Biotin synthaseNGR_c25140
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseNGR_b21240
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseNGR_b21430
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseNGR_b21240
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseNGR_b21430
CATB1
(NRULE_0386)
Muconate cycloisomerase
C
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseNGR_b21430
CATB1
(NRULE_0386)
Muconate cycloisomerase
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseNGR_b21430
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CNGR_c32650
任意 
BLAA
(NRULE_0122)
Beta-lactamase class A
 
BLAB
(NRULE_0123)
Metallo-beta-lactamase
Chlorocatechol degradation (beta-ketoadipate pathway)(NFUNC_0104)
必須A
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseNGR_b21430
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseNGR_c13930 NGR_c03800 NGR_b22150 NGR_b13990 NGR_c25710
CLCE
(NRULE_0384)
Maleylacetate reductase
CLCB
(NRULE_0387)
Chloromuconate cycloisomerase
B
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseNGR_b21430
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseNGR_c25710 NGR_c13930 NGR_c03800 NGR_b13990 NGR_b22150
CLCE
(NRULE_0384)
Maleylacetate reductase
任意 
CLCF
(NRULE_0385)
Chloromuconolactone dehalogenase
Dibenzothiophene degradation (via desulfurization)(NFUNC_0029)
必須A
DSZA
(NRULE_0103)
Dibenzothiophene-5,5-dioxide monooxygenase
DSZB
(NRULE_0104)
2'-hydroxybiphenyl-2-sulfinate desulfinase
DSZC
(NRULE_0105)
Dibenzothiophene monooxygenase
任意 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseNGR_c12650 NGR_b17040 NGR_b20100 NGR_c15230 NGR_c25600
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
必須A
EDIO
(NRULE_0058)
extradiol dioxygenaseNGR_b20130
METAH
(NRULE_0059)
meta-cleavage compound hydrolase
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydratase
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolase
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenase
B
EDIO
(NRULE_0058)
extradiol dioxygenaseNGR_b20130
2HMSD
(NRULE_0060)
2-hydroxymuconic semialdehyde dehydrogenase
4OT
(NRULE_0061)
4-oxalocrotonate tautomerase
4OD
(NRULE_0062)
4-oxalocrotonate decarboxylase
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydratase
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolase
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenase
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseNGR_a01910
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferase
ECTC
(NRULE_0188)
L-ectoine synthaseNGR_c33350
Extracellular electron transfer system(NFUNC_0098)
必須A
NAPC
(NRULE_0333)
Multiheme c-type cytochromeNGR_c10040
MTRC
(NRULE_0334)
OmcA/MtrC family decaheme c-type cytochrome
MTRA
(NRULE_0335)
MtrA/DmsE family decaheme c-type cytochrome
MTRB
(NRULE_0336)
Outer membrane protein MtrB homolog
Folate biosynthesis(NFUNC_0044)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseNGR_c23510
DHPS
(NRULE_0144)
Dihydropteroate synthaseNGR_c16600
FOLM
(NRULE_0146)
Dihydrofolate reductase FolM
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseNGR_c16590
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseNGR_c16580
FOLC
(NRULE_0160)
Bifunctional protein FolCNGR_c33810
PABB
(NRULE_0161)
Para-aminobenzoate synthase component INGR_c28430
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseNGR_c23510
DHPS
(NRULE_0144)
Dihydropteroate synthaseNGR_c16600
FOLA
(NRULE_0147)
Dihydrofolate reductaseNGR_c20290
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseNGR_c16590
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseNGR_c16580
FOLC
(NRULE_0160)
Bifunctional protein FolCNGR_c33810
PABB
(NRULE_0161)
Para-aminobenzoate synthase component INGR_c28430
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
C
GLAT
(NRULE_0142)
Glutamine amidotransferaseNGR_c23510
DHPS
(NRULE_0144)
Dihydropteroate synthaseNGR_c16600
DFR2
(NRULE_0148)
Dihydrofolate reductase type 2
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseNGR_c16590
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseNGR_c16580
FOLC
(NRULE_0160)
Bifunctional protein FolCNGR_c33810
PABB
(NRULE_0161)
Para-aminobenzoate synthase component INGR_c28430
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
Haloalkane degradation (conversion into hydroxyacid)(NFUNC_0010)
必須A
DHAA
(NRULE_0050)
Haloalkane dehalogenase
HAD
(NRULE_0051)
(S)-2-haloacid dehalogenaseNGR_c06140 NGR_b06620 NGR_b06290 NGR_b06590 NGR_c06220 NGR_c07220
B
DHAA
(NRULE_0050)
Haloalkane dehalogenase
DEH
(NRULE_0075)
Haloacetate dehalogenase
Human milk oligosaccharides metabolism(NFUNC_0083)
必須A
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
任意 
NAHK
(NRULE_0256)
N-acetylhexosamine 1-kinase
 
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferase
 
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseNGR_c01880 NGR_b18230 NGR_b17860
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylase
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseNGR_a01910
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferase
 
ECTC
(NRULE_0188)
L-ectoine synthaseNGR_c33350
4-hydroxyphenylacetate degradation(NFUNC_0068)
必須A
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseNGR_b20120
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseNGR_b20110
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseNGR_b20160
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseNGR_b20170 NGR_b05910
B
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenaseNGR_b20130
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseNGR_b20120
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseNGR_b20110
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseNGR_b20160
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseNGR_b20170 NGR_b05910
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseNGR_c12650 NGR_b17040 NGR_b20100 NGR_c15230 NGR_c25600
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseNGR_b20120
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseNGR_b20110
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseNGR_b20160
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseNGR_b20170 NGR_b05910
D
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseNGR_c15230 NGR_c12650 NGR_b20100 NGR_b17040 NGR_c25600
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenaseNGR_b20130
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseNGR_b20120
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseNGR_b20110
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseNGR_b20160
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseNGR_b20170 NGR_b05910
E
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseNGR_c15230 NGR_c25600 NGR_b17040 NGR_b20100 NGR_c12650
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenaseNGR_b20130
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseNGR_b20120
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseNGR_b20110
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseNGR_b20160
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseNGR_b05910 NGR_b20170
F
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseNGR_c25600 NGR_b17040 NGR_b20100 NGR_c12650 NGR_c15230
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseNGR_b20120
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseNGR_b20110
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseNGR_b20160
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseNGR_b05910 NGR_b20170
G
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenaseNGR_b20130
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseNGR_b20120
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseNGR_b20110
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseNGR_b20160
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseNGR_b20170 NGR_b05910
H
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseNGR_b20120
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseNGR_b20110
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseNGR_b20160
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseNGR_b20170 NGR_b05910
Macrolide antibiotic resistance(NFUNC_0045)
必須A
ERM
(NRULE_0164)
rRNA adenine N-6-methyltransferase
B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferase
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacA
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBNGR_c19790
D
ERE
(NRULE_0168)
Erythromycin esteraseNGR_b05770
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferase
F
MGT
(NRULE_0170)
Macrolide glycosyltransferase
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinNGR_b16970 NGR_b11800 NGR_b11240 NGR_c33090 NGR_a02170 NGR_c29860 NGR_a03670 NGR_c25320 NGR_c24710 NGR_c03140 NGR_b23110 NGR_b20260 NGR_b18040
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulator
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNGR_c29840 NGR_c03100 NGR_c19550
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntR
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRNGR_b08420 NGR_b07380 NGR_b12430
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRNGR_c16780
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntR
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikR
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscR
J
SMTA
(NRULE_0009)
Metallothionein
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNGR_c03100 NGR_c29840 NGR_c19550
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulator
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinNGR_c29850
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinNGR_c29860
Mycosamine biosynthesis(NFUNC_0095)
必須A
AMPHDII
(NRULE_0342)
GDP-3-keto-6-deoxy-D-mannose C-3 aminotransferase
GMD
(NRULE_0343)
GDP-mannose 4,6-dehydrataseNGR_a00410
任意 
AMPHDI
(NRULE_0341)
GDP-mycosamine glycosyltransferase
Naphthalene degradation (via hydroxylation by dioxygenase)(NFUNC_0067)
必須A
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitNGR_b23410 NGR_c04860 NGR_c26320
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunit
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenaseNGR_b20130
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAHG
(NRULE_0190)
Salicylate hydroxylase
B
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitNGR_c04860 NGR_c26320 NGR_b23410
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunit
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenaseNGR_b20130
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAGG
(NRULE_0191)
Salicylate 5-hydroxylase alpha subunit
NAGH
(NRULE_0192)
Salicylate 5-hydroxylase beta subunit
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentNGR_c26310 NGR_c26150 NGR_c04870 NGR_b23420 NGR_b07390
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinNGR_b15340 NGR_b12550 NGR_c16730 NGR_b11380 NGR_b08230 NGR_b07090 NGR_c26320 NGR_c04860 NGR_b23520 NGR_b23410 NGR_b17100
 
FDR2
(NRULE_0057)
Ferredoxin reductaseNGR_b16350 NGR_b14750 NGR_b07640 NGR_b17090
Nitrile hydratase(NFUNC_0002)
必須A
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaNGR_c20120
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaNGR_c20110
任意 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KNGR_c20100
 
COBW
(NRULE_0007)
CobW/P47K family proteinNGR_c27310 NGR_c29210 NGR_c18200
Nitrogenase(NFUNC_0094)
必須A
NIFD
(NRULE_0347)
Nitrogenase molybdenum-iron protein alpha chainNGR_a00880 NGR_a01120
NIFK
(NRULE_0348)
Nitrogenase molybdenum-iron protein beta chainNGR_a01110 NGR_a00870
VNFH
(NRULE_0353)
Nitrogenase reductaseNGR_a00890 NGR_a01130
B
ANFD
(NRULE_0344)
Nitrogenase iron-iron protein alpha chain
ANFK
(NRULE_0345)
Nitrogenase iron-iron protein beta chain
ANFG
(NRULE_0346)
Nitrogenase iron-iron protein delta chain
VNFH
(NRULE_0353)
Nitrogenase reductaseNGR_a00890 NGR_a01130
C
VNFD
(NRULE_0349)
Nitrogenase vanadium-iron protein alpha chain
VNFK
(NRULE_0351)
Nitrogenase vanadium-iron protein beta chain
VNFG
(NRULE_0352)
Nitrogenase vanadium-iron protein delta chain
VNFH
(NRULE_0353)
Nitrogenase reductaseNGR_a00890 NGR_a01130
D
VNFK
(NRULE_0350)
Nitrogenase vanadium-iron protein alpha/delta chain
VNFK
(NRULE_0351)
Nitrogenase vanadium-iron protein beta chain
VNFH
(NRULE_0353)
Nitrogenase reductaseNGR_a00890 NGR_a01130
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseNGR_b12520
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseNGR_c20940
PANE
(NRULE_0117)
2-dehydropantoate 2-reductase
PANC
(NRULE_0118)
Pantothenate synthetaseNGR_c20950
Phenol degradation(NFUNC_0028)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunit
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunit
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseNGR_b20090
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylase
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseNGR_b14750 NGR_b17090 NGR_b16350 NGR_b07640
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentNGR_b07390 NGR_c26150 NGR_c04870 NGR_b23420 NGR_c26310
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector protein
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinNGR_b08230 NGR_c26320 NGR_c16730 NGR_c04860 NGR_b23520 NGR_b23410 NGR_b17100 NGR_b07090 NGR_b11380 NGR_b12550 NGR_b15340
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseNGR_b20100 NGR_c25600 NGR_b17040 NGR_c15230 NGR_c12650
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitNGR_b21210
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitNGR_b21220
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseNGR_b21200
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseNGR_b21230
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseNGR_b21240
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseNGR_b21430
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitNGR_b21210
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitNGR_b21220
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseNGR_b21200
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseNGR_b21430
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
必須A
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseNGR_b03280
任意 
PQQA
(NRULE_0090)
Coenzyme PQQ synthesis protein A
 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BNGR_b03270
 
PQQD
(NRULE_0093)
Coenzyme PQQ synthesis protein D
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ENGR_b03300
 
PQQF
(NRULE_0095)
Coenzyme PQQ synthesis protein F
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseNGR_c05210
RIBA
(NRULE_0201)
GTP cyclohydrolase-2NGR_c05210
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibD
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseNGR_c21540 NGR_c09640
RIBE
(NRULE_0204)
Riboflavin synthaseNGR_c09600
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibF
Thiocyanate hydrolase(NFUNC_0003)
必須A
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaNGR_c20100 NGR_c20110
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaNGR_c20110 NGR_c20100
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gamma
B
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaNGR_c20100 NGR_c20110
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gamma
C
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaNGR_c20110 NGR_c20100
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gamma
Toluene degradation (conversion into protocatechuate via p-cresol)(NFUNC_0007)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunit
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunit
FDR1
(NRULE_0032)
Oxygenase electron transfer componentNGR_c04870 NGR_c26150 NGR_c26310 NGR_b07390 NGR_b23420
MME
(NRULE_0033)
Multicomponent monooxygenase effector protein
PCHF
(NRULE_0035)
4-cresol dehydrogenase flavoprotein subunit
PCHC
(NRULE_0036)
4-cresol dehydrogenase cytochrome c subunit
PCHA
(NRULE_0037)
p-hydroxybenzaldehyde dehydrogenase
POBA
(NRULE_0038)
p-hydroxybenzoate hydroxylaseNGR_b12590
任意 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunit
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinNGR_b12550 NGR_b11380 NGR_b08230 NGR_b07090 NGR_c16730 NGR_c04860 NGR_b23520 NGR_b23410 NGR_b17100 NGR_c26320 NGR_b15340
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseNGR_b17370
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseNGR_b11110
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeNGR_b11120 NGR_c28990
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseNGR_a02090
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseNGR_a02100
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding protein
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease protein
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinNGR_b04880 NGR_c27420 NGR_c18260
B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinNGR_a01540 NGR_b23310
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinNGR_b23300 NGR_a01530
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinNGR_a01520 NGR_b23290
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinNGR_a01510 NGR_b23320
C
BCCT
(NRULE_0220)
BCCT family transporterNGR_c26260
D
PROP
(NRULE_0221)
Osmoprotectant transporter
E
OPUE
(NRULE_0222)
Sodium/proline symporter
F
TEAA
(NRULE_0223)
TRAP transporter substrate-binding protein TeaA
TEAB
(NRULE_0224)
TRAP transporter small transmembrane protein TeaB
TEAC
(NRULE_0225)
TRAP transporter large transmembrane protein TeaC
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenase
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenase
SERC
(NRULE_0210)
Phosphoserine aminotransferase
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseNGR_c08990 NGR_b21130 NGR_b17160 NGR_b06680
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseNGR_c19930