Acid resistance (by GABA antiporter)(NFUNC_0071) |
必須 | A | GAD (NRULE_0231) | Glutamate decarboxylase | ROP_60750 |
GADC (NRULE_0234) | Glutamate/gamma-aminobutyrate antiporter | |
Alanine racemization(NFUNC_0063) |
必須 | A | ALR (NRULE_0228) | Alanine racemase | ROP_62400 |
n-alkane hydroxylation(NFUNC_0008) |
必須 | A | CYP153 (NRULE_0041) | Cytochrome P450 CYP153 | |
B | ALKB (NRULE_0024) | Alkane 1-monooxygenase | ROP_22570 ROP_pROB01-04350 |
C | MMA (NRULE_0027) | Multicomponent monooxygenase alpha subunit | |
MMB (NRULE_0028) | Multicomponent monooxygenase beta subunit | |
FDR1 (NRULE_0032) | Oxygenase electron transfer component | ROP_20970 ROP_11200 ROP_pROB02-00900 ROP_63950 ROP_61150 ROP_58950 ROP_26720 ROP_25780 ROP_53850 ROP_52840 ROP_40920 ROP_38620 ROP_37440 ROP_25700 ROP_25470 ROP_24410 ROP_34890 ROP_30070 ROP_28620 ROP_21000 ROP_17720 |
MME (NRULE_0033) | Multicomponent monooxygenase effector protein | |
任意 | | RUBA (NRULE_0039) | Rubredoxin | ROP_pROB01-04360 ROP_pROB02-02010 ROP_pROB01-04370 ROP_22590 ROP_22580 |
| RUBB (NRULE_0040) | Rubredoxin reductase | ROP_22600 ROP_pROB01-04380 |
| MMG1 (NRULE_0029) | Multicomponent monooxygenase gamma subunit | |
| MMG2 (NRULE_0030) | Multicomponent monooxygenase gamma subunit | |
| MMG3 (NRULE_0031) | Multicomponent monooxygenase gamma subunit | |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | ROP_pROB02-01580 ROP_pROB02-01600 ROP_pROB02-02050 ROP_40940 ROP_39230 ROP_38640 ROP_31670 ROP_28570 ROP_25670 ROP_24850 ROP_22170 ROP_20980 ROP_18030 ROP_17790 ROP_14890 ROP_14870 ROP_08600 ROP_06010 ROP_43970 ROP_44530 ROP_42780 ROP_58730 ROP_71710 ROP_70810 ROP_46320 ROP_42810 ROP_46340 ROP_53630 |
Ampicillin resistance(NFUNC_0046) |
必須 | A | BLAA (NRULE_0122) | Beta-lactamase class A | ROP_02970 |
任意 | | BLAB (NRULE_0123) | Metallo-beta-lactamase | |
| BLAD (NRULE_0125) | Beta-lactamase class D | |
Aniline degradation (conversion into catechol)(NFUNC_0075) |
必須 | A | ATDA1 (NRULE_0240) | Gamma-glutamylanilide synthetase | |
ATDA3 (NRULE_0357) | Aniline dioxygenase large subunit | |
ATDA4 (NRULE_0358) | Aniline dioxygenase small subunit | |
任意 | | ATDA2 (NRULE_0241) | Putative gamma-glutamylanilide hydrolase | |
| FDR1 (NRULE_0032) | Oxygenase electron transfer component | ROP_58950 ROP_53850 ROP_52840 ROP_40920 ROP_38620 ROP_37440 ROP_34890 ROP_pROB02-00900 ROP_30070 ROP_28620 ROP_26720 ROP_25780 ROP_25700 ROP_25470 ROP_24410 ROP_21000 ROP_20970 ROP_17720 ROP_63950 ROP_11200 ROP_61150 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | ROP_pROB02-01600 ROP_pROB02-02050 ROP_pROB02-01580 ROP_71710 ROP_70810 ROP_58730 ROP_53630 ROP_46340 ROP_46320 ROP_44530 ROP_43970 ROP_42810 ROP_42780 ROP_40940 ROP_39230 ROP_38640 ROP_31670 ROP_28570 ROP_25670 ROP_24850 ROP_22170 ROP_20980 ROP_18030 ROP_17790 ROP_14890 ROP_14870 ROP_08600 ROP_06010 |
| FDR2 (NRULE_0057) | Ferredoxin reductase | ROP_53800 ROP_54110 ROP_70800 ROP_pROB01-04380 ROP_pROB02-01180 ROP_pROB02-01610 ROP_33130 ROP_42790 ROP_45680 |
Anthranilate biosynthesis(NFUNC_0038) |
必須 | A | GLAT (NRULE_0142) | Glutamine amidotransferase | ROP_35100 ROP_61630 |
TRPE (NRULE_0143) | Anthranilate synthase component I | ROP_07420 |
Anthranilate degradation (via hydroxylation)(NFUNC_0018) |
必須 | A | ANTA (NRULE_0044) | Anthranilate 1,2-dioxygenase large subunit | |
ANTB (NRULE_0045) | Anthranilate 1,2-dioxygenase small subunit | |
任意 | | ANTC (NRULE_0081) | Anthranilate 1,2-dioxygenase electron transfer component | |
| FDR1 (NRULE_0032) | Oxygenase electron transfer component | ROP_38620 ROP_37440 ROP_34890 ROP_30070 ROP_28620 ROP_26720 ROP_25780 ROP_25700 ROP_25470 ROP_20970 ROP_21000 ROP_24410 ROP_11200 ROP_17720 ROP_63950 ROP_pROB02-00900 ROP_61150 ROP_58950 ROP_53850 ROP_52840 ROP_40920 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | ROP_58730 ROP_46320 ROP_46340 ROP_53630 ROP_70810 ROP_43970 ROP_42810 ROP_42780 ROP_40940 ROP_39230 ROP_38640 ROP_31670 ROP_28570 ROP_25670 ROP_24850 ROP_22170 ROP_20980 ROP_18030 ROP_17790 ROP_14890 ROP_14870 ROP_08600 ROP_06010 ROP_71710 ROP_pROB02-01580 ROP_pROB02-01600 ROP_pROB02-02050 ROP_44530 |
| FDR2 (NRULE_0057) | Ferredoxin reductase | ROP_54110 ROP_70800 ROP_45680 ROP_pROB02-01180 ROP_pROB01-04380 ROP_53800 ROP_33130 ROP_42790 ROP_pROB02-01610 |
Aromatic hydrocarbon degradation (via hydroxylation by dioxygenase)(NFUNC_0016) |
必須 | A | RHDA (NRULE_0048) | Ring-hydroxylating dioxygenase alpha subunit | ROP_17790 ROP_18030 ROP_20980 ROP_24850 ROP_25670 ROP_28570 ROP_31670 ROP_46340 ROP_71710 ROP_pROB02-01580 ROP_pROB02-02050 ROP_14870 |
RHDB (NRULE_0049) | Ring-hydroxylating dioxygenase beta subunit | ROP_pROB02-01590 ROP_71720 ROP_46330 ROP_25680 ROP_20990 ROP_pROB02-02060 |
CDDH (NRULE_0056) | Cis-dihydrodiol dehydrogenase | ROP_pROB02-01630 |
任意 | | FDR1 (NRULE_0032) | Oxygenase electron transfer component | ROP_24410 ROP_53850 ROP_58950 ROP_61150 ROP_63950 ROP_pROB02-00900 ROP_11200 ROP_17720 ROP_20970 ROP_21000 ROP_25470 ROP_25700 ROP_25780 ROP_26720 ROP_28620 ROP_30070 ROP_34890 ROP_37440 ROP_38620 ROP_40920 ROP_52840 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | ROP_pROB02-02050 ROP_06010 ROP_08600 ROP_14870 ROP_14890 ROP_17790 ROP_18030 ROP_20980 ROP_22170 ROP_24850 ROP_25670 ROP_28570 ROP_31670 ROP_38640 ROP_39230 ROP_40940 ROP_42780 ROP_42810 ROP_43970 ROP_44530 ROP_46320 ROP_46340 ROP_53630 ROP_58730 ROP_70810 ROP_71710 ROP_pROB02-01580 ROP_pROB02-01600 |
| FDR2 (NRULE_0057) | Ferredoxin reductase | ROP_54110 ROP_pROB02-01610 ROP_pROB02-01180 ROP_pROB01-04380 ROP_70800 ROP_53800 ROP_45680 ROP_42790 ROP_33130 |
Arsenical resistance(NFUNC_0004) |
必須 | A | ARSB1 (NRULE_0015) | Arsenical pump membrane protein | |
ARSC1 (NRULE_0017) | Arsenate reductase | ROP_57170 |
B | ARSB1 (NRULE_0015) | Arsenical pump membrane protein | |
ARSC2 (NRULE_0018) | Arsenate reductase | |
C | ARSB1 (NRULE_0015) | Arsenical pump membrane protein | |
ARSC3 (NRULE_0019) | Arsenate reductase | |
D | ARSB2 (NRULE_0016) | Arsenite resistance protein ArsB | ROP_29960 ROP_00160 |
ARSC1 (NRULE_0017) | Arsenate reductase | ROP_57170 |
E | ARSB2 (NRULE_0016) | Arsenite resistance protein ArsB | ROP_29960 ROP_00160 |
ARSC2 (NRULE_0018) | Arsenate reductase | |
F | ARSB2 (NRULE_0016) | Arsenite resistance protein ArsB | ROP_00160 ROP_29960 |
ARSC3 (NRULE_0019) | Arsenate reductase | |
任意 | | ARSA (NRULE_0014) | Arsenical pump-driving ATPase | ROP_08460 ROP_00210 |
| ARSD (NRULE_0020) | Arsenical resistance operon trans-acting repressor ArsD | ROP_00200 |
| ARSH (NRULE_0021) | ArsH protein | |
Artificial lacto-N-biose biosynthesis(NFUNC_0026) |
必須 | A | SP (NRULE_0109) | Sucrose phosphorylase | |
GALT (NRULE_0110) | Galactose-1-phosphate uridylyltransferase | ROP_55620 |
GALE (NRULE_0111) | UDP-glucose 4-epimerase | ROP_67940 ROP_55580 |
LNBP (NRULE_0112) | 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase | |
Bacitracin resistance(NFUNC_0022) |
必須 | A | UPPP (NRULE_0097) | Undecaprenyl-diphosphatase | ROP_06170 |
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017) |
必須 | A | BENA (NRULE_0046) | Benzoate 1,2-dioxygenase alpha subunit | ROP_20980 |
BENB (NRULE_0047) | Benzoate 1,2-dioxygenase beta subunit | ROP_20990 |
BEND (NRULE_0082) | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase | ROP_21010 |
任意 | | BENC (NRULE_0055) | Benzoate 1,2-dioxygenase electron transfer component | ROP_21000 |
| FDR1 (NRULE_0032) | Oxygenase electron transfer component | ROP_26720 ROP_11200 ROP_17720 ROP_20970 ROP_21000 ROP_24410 ROP_25470 ROP_25700 ROP_25780 ROP_28620 ROP_30070 ROP_34890 ROP_37440 ROP_38620 ROP_40920 ROP_52840 ROP_53850 ROP_58950 ROP_61150 ROP_63950 ROP_pROB02-00900 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | ROP_24850 ROP_22170 ROP_20980 ROP_18030 ROP_17790 ROP_14890 ROP_14870 ROP_08600 ROP_06010 ROP_44530 ROP_43970 ROP_42810 ROP_42780 ROP_40940 ROP_46320 ROP_58730 ROP_70810 ROP_71710 ROP_53630 ROP_pROB02-01580 ROP_pROB02-01600 ROP_46340 ROP_pROB02-02050 ROP_39230 ROP_38640 ROP_31670 ROP_28570 ROP_25670 |
| FDR2 (NRULE_0057) | Ferredoxin reductase | ROP_53800 ROP_pROB02-01610 ROP_pROB02-01180 ROP_pROB01-04380 ROP_70800 ROP_54110 ROP_45680 ROP_42790 ROP_33130 |
Beta-lactam antibiotic resistance(NFUNC_0033) |
必須 | A | BLAA (NRULE_0122) | Beta-lactamase class A | ROP_02970 |
B | BLAB (NRULE_0123) | Metallo-beta-lactamase | |
C | BLAC (NRULE_0124) | Beta-lactamase class C | |
D | BLAD (NRULE_0125) | Beta-lactamase class D | |
Betaine biosynthesis (from choline)(NFUNC_0049) |
必須 | A | BETA (NRULE_0175) | Choline dehydrogenase | |
B | GBSB (NRULE_0176) | Alcohol dehydrogenase | |
BETB (NRULE_0177) | Betaine aldehyde dehydrogenase | ROP_15570 |
C | CHOX (NRULE_0178) | Choline oxidase | ROP_14830 ROP_15550 |
Bioplastic degradation(NFUNC_0015) |
必須 | A | PHAZ1 (NRULE_0023) | Intracellular poly(3-hydroxyalkanoate) depolymerase | |
B | PHAZ2 (NRULE_0080) | Poly(3-hydroxyalkanoate) depolymerase | |
C | PHAZ3 (NRULE_0088) | Poly(3-hydroxyalkanoate) depolymerase | ROP_36310 |
任意 | | PHAY (NRULE_0022) | D-(-)-3-hydroxybutyrate oligomer hydrolase | |
Biotin biosynthesis(NFUNC_0051) |
必須 | A | BIOF (NRULE_0182) | 8-amino-7-oxononanoate synthase | |
BIOA (NRULE_0183) | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | ROP_07830 |
BIOD (NRULE_0184) | ATP-dependent dethiobiotin synthetase BioD | ROP_07810 |
BIOB (NRULE_0185) | Biotin synthase | ROP_07700 |
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013) |
必須 | A | CATA (NRULE_0052) | Catechol 1,2-dioxygenase | ROP_22420 ROP_20870 |
CATB2 (NRULE_0053) | (Chloro)muconate cycloisomerase | ROP_20860 |
CATC (NRULE_0054) | Muconolactone isomerase | ROP_20850 |
PCAD (NRULE_0070) | 3-oxoadipate enol-lactonase | ROP_10540 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | ROP_37640 ROP_10500 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | ROP_10490 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | ROP_25860 ROP_22440 ROP_10560 ROP_27210 |
B | CATA (NRULE_0052) | Catechol 1,2-dioxygenase | ROP_20870 ROP_22420 |
CATC (NRULE_0054) | Muconolactone isomerase | ROP_20850 |
PCAD (NRULE_0070) | 3-oxoadipate enol-lactonase | ROP_10540 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | ROP_37640 ROP_10500 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | ROP_10490 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | ROP_10560 ROP_25860 ROP_27210 ROP_22440 |
CATB1 (NRULE_0386) | Muconate cycloisomerase | ROP_20860 |
C | CATA (NRULE_0052) | Catechol 1,2-dioxygenase | ROP_20870 ROP_22420 |
CATC (NRULE_0054) | Muconolactone isomerase | ROP_20850 |
PCAL (NRULE_0071) | 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase | ROP_10540 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | ROP_10500 ROP_37640 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | ROP_10490 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | ROP_27210 ROP_10560 ROP_22440 ROP_25860 |
CATB1 (NRULE_0386) | Muconate cycloisomerase | ROP_20860 |
D | CATA (NRULE_0052) | Catechol 1,2-dioxygenase | ROP_22420 ROP_20870 |
CATB2 (NRULE_0053) | (Chloro)muconate cycloisomerase | ROP_20860 |
CATC (NRULE_0054) | Muconolactone isomerase | ROP_20850 |
PCAL (NRULE_0071) | 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase | ROP_10540 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | ROP_10500 ROP_37640 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | ROP_10490 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | ROP_27210 ROP_25860 ROP_22440 ROP_10560 |
Cephalosporin resistance(NFUNC_0048) |
必須 | A | BLAC (NRULE_0124) | Beta-lactamase class C | |
任意 | | BLAA (NRULE_0122) | Beta-lactamase class A | ROP_02970 |
| BLAB (NRULE_0123) | Metallo-beta-lactamase | |
Chlorocatechol degradation (beta-ketoadipate pathway)(NFUNC_0104) |
必須 | A | PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | ROP_10500 ROP_37640 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | ROP_10490 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | ROP_27210 ROP_10560 ROP_22440 ROP_25860 |
CLCA (NRULE_0382) | Chlorocatechol 1,2-dioxygenase | |
CLCD (NRULE_0383) | Dienelactone hydrolase | ROP_14570 ROP_62360 ROP_55360 ROP_40040 ROP_38150 ROP_35450 ROP_30790 ROP_29340 ROP_22830 ROP_19800 |
CLCE (NRULE_0384) | Maleylacetate reductase | ROP_42960 |
CLCB (NRULE_0387) | Chloromuconate cycloisomerase | |
B | CATB2 (NRULE_0053) | (Chloro)muconate cycloisomerase | ROP_20860 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | ROP_37640 ROP_10500 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | ROP_10490 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | ROP_27210 ROP_22440 ROP_10560 ROP_25860 |
CLCA (NRULE_0382) | Chlorocatechol 1,2-dioxygenase | |
CLCD (NRULE_0383) | Dienelactone hydrolase | ROP_30790 ROP_29340 ROP_19800 ROP_55360 ROP_62360 ROP_38150 ROP_22830 ROP_14570 ROP_40040 ROP_35450 |
CLCE (NRULE_0384) | Maleylacetate reductase | ROP_42960 |
任意 | | CLCF (NRULE_0385) | Chloromuconolactone dehalogenase | |
Dibenzothiophene degradation (via desulfurization)(NFUNC_0029) |
必須 | A | DSZA (NRULE_0103) | Dibenzothiophene-5,5-dioxide monooxygenase | |
DSZB (NRULE_0104) | 2'-hydroxybiphenyl-2-sulfinate desulfinase | |
DSZC (NRULE_0105) | Dibenzothiophene monooxygenase | |
任意 | | FADR1 (NRULE_0101) | NADH-dependent flavin reductase | ROP_44570 ROP_43020 ROP_37400 ROP_33700 ROP_33620 ROP_33000 ROP_31700 ROP_25720 ROP_22400 ROP_22110 ROP_16720 ROP_pROB02-01940 ROP_14560 ROP_14290 ROP_13730 ROP_20930 ROP_71800 ROP_58570 ROP_53460 ROP_46610 ROP_46230 |
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011) |
必須 | A | EDIO (NRULE_0058) | extradiol dioxygenase | ROP_46420 ROP_07440 ROP_22150 ROP_44560 ROP_46210 ROP_58640 ROP_70940 ROP_pROB02-01620 ROP_pROB02-01950 |
METAH (NRULE_0059) | meta-cleavage compound hydrolase | ROP_44550 |
HPDH (NRULE_0063) | 2-hydroxypent-2,4-dienoate hydratase | |
HOA (NRULE_0064) | 4-hydroxy-2-oxovalerate aldolase | ROP_pROB02-02240 ROP_34160 ROP_37360 ROP_58620 ROP_44500 ROP_54050 |
ACDH (NRULE_0065) | Acetaldehyde dehydrogenase | ROP_37350 ROP_44490 ROP_54060 ROP_58610 ROP_34170 ROP_pROB02-02250 |
B | EDIO (NRULE_0058) | extradiol dioxygenase | ROP_58640 ROP_07440 ROP_pROB02-01950 ROP_pROB02-01620 ROP_70940 ROP_22150 ROP_46420 ROP_44560 ROP_46210 |
2HMSD (NRULE_0060) | 2-hydroxymuconic semialdehyde dehydrogenase | |
4OT (NRULE_0061) | 4-oxalocrotonate tautomerase | ROP_07460 |
4OD (NRULE_0062) | 4-oxalocrotonate decarboxylase | |
HPDH (NRULE_0063) | 2-hydroxypent-2,4-dienoate hydratase | |
HOA (NRULE_0064) | 4-hydroxy-2-oxovalerate aldolase | ROP_pROB02-02240 ROP_37360 ROP_44500 ROP_34160 ROP_54050 ROP_58620 |
ACDH (NRULE_0065) | Acetaldehyde dehydrogenase | ROP_58610 ROP_37350 ROP_pROB02-02250 ROP_54060 ROP_44490 ROP_34170 |
Ectoine biosynthesis(NFUNC_0056) |
必須 | A | ECTB (NRULE_0186) | Diaminobutyrate--2-oxoglutarate transaminase | ROP_10280 |
ECTA (NRULE_0187) | L-2,4-diaminobutyric acid acetyltransferase | ROP_10270 |
ECTC (NRULE_0188) | L-ectoine synthase | ROP_10290 |
Folate biosynthesis(NFUNC_0044) |
必須 | A | GLAT (NRULE_0142) | Glutamine amidotransferase | ROP_61630 ROP_35100 |
DHPS (NRULE_0144) | Dihydropteroate synthase | ROP_15020 ROP_43250 ROP_60280 |
FOLM (NRULE_0146) | Dihydrofolate reductase FolM | |
FOLB (NRULE_0158) | Dihydroneopterin aldolase | ROP_43260 |
FOLK (NRULE_0159) | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | ROP_43270 |
FOLC (NRULE_0160) | Bifunctional protein FolC | ROP_10390 |
PABB (NRULE_0161) | Para-aminobenzoate synthase component I | ROP_61630 |
PABC (NRULE_0162) | Aminodeoxychorismate lyase | |
B | GLAT (NRULE_0142) | Glutamine amidotransferase | ROP_35100 ROP_61630 |
DHPS (NRULE_0144) | Dihydropteroate synthase | ROP_60280 ROP_15020 ROP_43250 |
FOLA (NRULE_0147) | Dihydrofolate reductase | ROP_19630 |
FOLB (NRULE_0158) | Dihydroneopterin aldolase | ROP_43260 |
FOLK (NRULE_0159) | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | ROP_43270 |
FOLC (NRULE_0160) | Bifunctional protein FolC | ROP_10390 |
PABB (NRULE_0161) | Para-aminobenzoate synthase component I | ROP_61630 |
PABC (NRULE_0162) | Aminodeoxychorismate lyase | |
C | GLAT (NRULE_0142) | Glutamine amidotransferase | ROP_61630 ROP_35100 |
DHPS (NRULE_0144) | Dihydropteroate synthase | ROP_43250 ROP_15020 ROP_60280 |
DFR2 (NRULE_0148) | Dihydrofolate reductase type 2 | |
FOLB (NRULE_0158) | Dihydroneopterin aldolase | ROP_43260 |
FOLK (NRULE_0159) | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | ROP_43270 |
FOLC (NRULE_0160) | Bifunctional protein FolC | ROP_10390 |
PABB (NRULE_0161) | Para-aminobenzoate synthase component I | ROP_61630 |
PABC (NRULE_0162) | Aminodeoxychorismate lyase | |
GABA biosynthesis(NFUNC_0066) |
必須 | A | GAD (NRULE_0231) | Glutamate decarboxylase | ROP_60750 |
Haloalkane degradation (conversion into hydroxyacid)(NFUNC_0010) |
必須 | A | DHAA (NRULE_0050) | Haloalkane dehalogenase | |
HAD (NRULE_0051) | (S)-2-haloacid dehalogenase | ROP_03560 ROP_pROB01-03120 ROP_34420 |
B | DHAA (NRULE_0050) | Haloalkane dehalogenase | |
DEH (NRULE_0075) | Haloacetate dehalogenase | |
Human milk oligosaccharides metabolism(NFUNC_0083) |
必須 | A | LNBP (NRULE_0112) | 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase | |
任意 | | NAHK (NRULE_0256) | N-acetylhexosamine 1-kinase | |
| GALT (NRULE_0110) | Galactose-1-phosphate uridylyltransferase | ROP_55620 |
| GALE (NRULE_0111) | UDP-glucose 4-epimerase | ROP_67940 ROP_55580 |
Hydroxyectoine biosynthesis(NFUNC_0057) |
必須 | A | ECTD (NRULE_0189) | Ectoine hydroxylase | ROP_44930 ROP_50010 |
任意 | | ECTB (NRULE_0186) | Diaminobutyrate--2-oxoglutarate transaminase | ROP_10280 |
| ECTA (NRULE_0187) | L-2,4-diaminobutyric acid acetyltransferase | ROP_10270 |
| ECTC (NRULE_0188) | L-ectoine synthase | ROP_10290 |
4-hydroxyphenylacetate degradation(NFUNC_0068) |
必須 | A | HPAB1 (NRULE_0085) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
HPAC (NRULE_0102) | 4-hydroxyphenylacetate 3-monooxygenase reductase component | ROP_25720 |
HPAD1 (NRULE_0193) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | ROP_71660 |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
B | HPAB1 (NRULE_0085) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
HPAC (NRULE_0102) | 4-hydroxyphenylacetate 3-monooxygenase reductase component | ROP_25720 |
HPAD2 (NRULE_0194) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | ROP_71660 |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
C | HPAB1 (NRULE_0085) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
FADR1 (NRULE_0101) | NADH-dependent flavin reductase | ROP_58570 ROP_pROB02-01940 ROP_37400 ROP_43020 ROP_44570 ROP_46230 ROP_46610 ROP_53460 ROP_71800 ROP_13730 ROP_14290 ROP_14560 ROP_16720 ROP_20930 ROP_22110 ROP_22400 ROP_25720 ROP_31700 ROP_33000 ROP_33620 ROP_33700 |
HPAD1 (NRULE_0193) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | ROP_71660 |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
D | HPAB1 (NRULE_0085) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
FADR1 (NRULE_0101) | NADH-dependent flavin reductase | ROP_25720 ROP_13730 ROP_14290 ROP_14560 ROP_16720 ROP_20930 ROP_22110 ROP_22400 ROP_31700 ROP_33000 ROP_33620 ROP_33700 ROP_37400 ROP_43020 ROP_44570 ROP_46230 ROP_46610 ROP_53460 ROP_58570 ROP_71800 ROP_pROB02-01940 |
HPAD2 (NRULE_0194) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | ROP_71660 |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
E | HPAB2 (NRULE_0086) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
FADR1 (NRULE_0101) | NADH-dependent flavin reductase | ROP_16720 ROP_14560 ROP_14290 ROP_13730 ROP_33620 ROP_33000 ROP_31700 ROP_25720 ROP_22400 ROP_22110 ROP_20930 ROP_58570 ROP_53460 ROP_46610 ROP_46230 ROP_44570 ROP_pROB02-01940 ROP_71800 ROP_43020 ROP_37400 ROP_33700 |
HPAD2 (NRULE_0194) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | ROP_71660 |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
F | HPAB2 (NRULE_0086) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
FADR1 (NRULE_0101) | NADH-dependent flavin reductase | ROP_46610 ROP_71800 ROP_pROB02-01940 ROP_33700 ROP_33620 ROP_33000 ROP_31700 ROP_25720 ROP_22400 ROP_22110 ROP_20930 ROP_16720 ROP_14560 ROP_14290 ROP_13730 ROP_37400 ROP_43020 ROP_44570 ROP_46230 ROP_53460 ROP_58570 |
HPAD1 (NRULE_0193) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | ROP_71660 |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
G | HPAB2 (NRULE_0086) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
HPAC (NRULE_0102) | 4-hydroxyphenylacetate 3-monooxygenase reductase component | ROP_25720 |
HPAD2 (NRULE_0194) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | ROP_71660 |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
H | HPAB2 (NRULE_0086) | 4-hydroxyphenylacetate 3-monooxygenase oxygenase component | |
HPAC (NRULE_0102) | 4-hydroxyphenylacetate 3-monooxygenase reductase component | ROP_25720 |
HPAD1 (NRULE_0193) | Homoprotocatechuate 2,3-dioxygenase | |
HPAE (NRULE_0195) | 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | |
HPAF (NRULE_0196) | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase | |
HPAG (NRULE_0197) | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase | |
HPAH (NRULE_0198) | 2-oxo-hepta-3-ene-1,7-dioate hydratase | ROP_71660 |
HPAI (NRULE_0199) | 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase | |
Macrolide antibiotic resistance(NFUNC_0045) |
必須 | A | ERM (NRULE_0164) | rRNA adenine N-6-methyltransferase | |
B | RLMA (NRULE_0165) | 23S rRNA (guanine-N(1))-methyltransferase | ROP_60330 |
C | MACA (NRULE_0166) | Macrolide-specific efflux protein MacA | |
MACB (NRULE_0167) | Macrolide export ATP-binding/permease protein MacB | |
D | ERE (NRULE_0168) | Erythromycin esterase | |
E | MPH (NRULE_0169) | Macrolide 2'-phosphotransferase | |
F | MGT (NRULE_0170) | Macrolide glycosyltransferase | ROP_49160 |
Metal-binding protein(NFUNC_0105) |
必須 | A | MOP (NRULE_0322) | Putative molybdenum-binding protein | ROP_37310 ROP_09900 ROP_34590 ROP_34560 |
B | MODE (NRULE_0323) | Putative molybdate-dependent transcriptional regulator | |
C | MODA (NRULE_0324) | Molybdate ABC transporter substrate-binding protein | ROP_11350 ROP_pROB01-02730 ROP_03090 ROP_34580 ROP_32460 ROP_23340 ROP_09930 |
D | MNTR (NRULE_0327) | DtxR family transcriptional regulator MntR | |
E | CUER (NRULE_0328) | Copper-responsive transcriptional regulator CueR | |
F | SOXR (NRULE_0329) | Redox-sensitive transcriptional activator SoxR | ROP_03030 ROP_57140 |
G | ZNTR (NRULE_0330) | Zinc-responsive transcriptional regulator ZntR | |
H | NIKR (NRULE_0331) | Nickel-responsive transcriptional regulator NikR | |
I | ISCR (NRULE_0332) | Rrf2 family transcriptional regulator IscR | |
J | SMTA (NRULE_0009) | Metallothionein | |
Molybdate transport (ABC transporter)(NFUNC_0097) |
必須 | A | MODA (NRULE_0324) | Molybdate ABC transporter substrate-binding protein | ROP_pROB01-02730 ROP_34580 ROP_32460 ROP_23340 ROP_11350 ROP_09930 ROP_03090 |
任意 | | MODE (NRULE_0323) | Putative molybdate-dependent transcriptional regulator | |
| MODB (NRULE_0325) | Molybdate ABC transporter permease protein | ROP_34570 |
| MODC (NRULE_0326) | Molybdate ABC transporter ATP-binding protein | |
Mycosamine biosynthesis(NFUNC_0095) |
必須 | A | AMPHDII (NRULE_0342) | GDP-3-keto-6-deoxy-D-mannose C-3 aminotransferase | |
GMD (NRULE_0343) | GDP-mannose 4,6-dehydratase | ROP_pKNR-00800 |
任意 | | AMPHDI (NRULE_0341) | GDP-mycosamine glycosyltransferase | |
Naphthalene degradation (via hydroxylation by dioxygenase)(NFUNC_0067) |
必須 | A | RHDA (NRULE_0048) | Ring-hydroxylating dioxygenase alpha subunit | ROP_46340 ROP_31670 ROP_28570 ROP_25670 ROP_24850 ROP_20980 ROP_18030 ROP_17790 ROP_14870 ROP_pROB02-02050 ROP_pROB02-01580 ROP_71710 |
RHDB (NRULE_0049) | Ring-hydroxylating dioxygenase beta subunit | ROP_pROB02-02060 ROP_pROB02-01590 ROP_71720 ROP_46330 ROP_25680 ROP_20990 |
CDDH (NRULE_0056) | Cis-dihydrodiol dehydrogenase | ROP_pROB02-01630 |
EDIO (NRULE_0058) | extradiol dioxygenase | ROP_58640 ROP_07440 ROP_22150 ROP_44560 ROP_46210 ROP_46420 ROP_70940 ROP_pROB02-01620 ROP_pROB02-01950 |
NAHD (NRULE_0171) | 2-hydroxychromene-2-carboxylate isomerase | |
NAHE (NRULE_0172) | Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase | ROP_pROB02-02090 |
NAHF (NRULE_0173) | Salicylaldehyde dehydrogenase | |
NAHG (NRULE_0190) | Salicylate hydroxylase | |
B | RHDA (NRULE_0048) | Ring-hydroxylating dioxygenase alpha subunit | ROP_pROB02-01580 ROP_14870 ROP_17790 ROP_18030 ROP_20980 ROP_24850 ROP_25670 ROP_28570 ROP_31670 ROP_46340 ROP_71710 ROP_pROB02-02050 |
RHDB (NRULE_0049) | Ring-hydroxylating dioxygenase beta subunit | ROP_pROB02-02060 ROP_20990 ROP_25680 ROP_46330 ROP_71720 ROP_pROB02-01590 |
CDDH (NRULE_0056) | Cis-dihydrodiol dehydrogenase | ROP_pROB02-01630 |
EDIO (NRULE_0058) | extradiol dioxygenase | ROP_pROB02-01950 ROP_46420 ROP_46210 ROP_44560 ROP_22150 ROP_07440 ROP_pROB02-01620 ROP_70940 ROP_58640 |
NAHD (NRULE_0171) | 2-hydroxychromene-2-carboxylate isomerase | |
NAHE (NRULE_0172) | Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase | ROP_pROB02-02090 |
NAHF (NRULE_0173) | Salicylaldehyde dehydrogenase | |
NAGG (NRULE_0191) | Salicylate 5-hydroxylase alpha subunit | |
NAGH (NRULE_0192) | Salicylate 5-hydroxylase beta subunit | |
任意 | | FDR1 (NRULE_0032) | Oxygenase electron transfer component | ROP_17720 ROP_20970 ROP_21000 ROP_24410 ROP_25470 ROP_25700 ROP_25780 ROP_26720 ROP_28620 ROP_30070 ROP_34890 ROP_37440 ROP_38620 ROP_40920 ROP_61150 ROP_52840 ROP_63950 ROP_pROB02-00900 ROP_58950 ROP_53850 ROP_11200 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | ROP_pROB02-02050 ROP_06010 ROP_71710 ROP_70810 ROP_58730 ROP_53630 ROP_46340 ROP_46320 ROP_44530 ROP_43970 ROP_42810 ROP_42780 ROP_40940 ROP_39230 ROP_38640 ROP_31670 ROP_28570 ROP_25670 ROP_24850 ROP_22170 ROP_20980 ROP_18030 ROP_17790 ROP_14890 ROP_14870 ROP_08600 ROP_pROB02-01580 ROP_pROB02-01600 |
| FDR2 (NRULE_0057) | Ferredoxin reductase | ROP_33130 ROP_45680 ROP_42790 ROP_pROB02-01610 ROP_pROB02-01180 ROP_pROB01-04380 ROP_70800 ROP_54110 ROP_53800 |
Nitrile hydratase(NFUNC_0002) |
必須 | A | NHAA (NRULE_0001) | Nitrile hydratase subunit alpha | |
NHAB (NRULE_0002) | Nitrile hydratase subunit beta | |
任意 | | P14K (NRULE_0006) | Nitrile hydratase activator P14K | |
| COBW (NRULE_0007) | CobW/P47K family protein | ROP_56820 ROP_64770 |
(R)-pantothenate biosynthesis(NFUNC_0030) |
必須 | A | PAND (NRULE_0115) | Aspartate 1-decarboxylase | ROP_43320 |
PANB (NRULE_0116) | 3-methyl-2-oxobutanoate hydroxymethyltransferase | ROP_08950 |
PANE (NRULE_0117) | 2-dehydropantoate 2-reductase | ROP_13640 |
PANC (NRULE_0118) | Pantothenate synthetase | ROP_43310 |
Penicillin resistance(NFUNC_0047) |
必須 | A | BLAA (NRULE_0122) | Beta-lactamase class A | ROP_02970 |
B | BLAD (NRULE_0125) | Beta-lactamase class D | |
任意 | | BLAB (NRULE_0123) | Metallo-beta-lactamase | |
Phenol degradation(NFUNC_0028) |
必須 | A | MMA (NRULE_0027) | Multicomponent monooxygenase alpha subunit | |
MMB (NRULE_0028) | Multicomponent monooxygenase beta subunit | |
MMG1 (NRULE_0029) | Multicomponent monooxygenase gamma subunit | |
B | PHEA1 (NRULE_0083) | Aromatic ring hydroxylase | ROP_22410 ROP_20940 ROP_14550 ROP_37410 ROP_pROB02-01900 |
C | PHEA2 (NRULE_0084) | Aromatic ring hydroxylase | |
任意 | | FDR2 (NRULE_0057) | Ferredoxin reductase | ROP_54110 ROP_33130 ROP_42790 ROP_45680 ROP_53800 ROP_70800 ROP_pROB01-04380 ROP_pROB02-01180 ROP_pROB02-01610 |
| FDR1 (NRULE_0032) | Oxygenase electron transfer component | ROP_26720 ROP_53850 ROP_58950 ROP_25700 ROP_25470 ROP_61150 ROP_63950 ROP_pROB02-00900 ROP_25780 ROP_24410 ROP_21000 ROP_11200 ROP_20970 ROP_17720 ROP_28620 ROP_30070 ROP_34890 ROP_37440 ROP_38620 ROP_40920 ROP_52840 |
| MME (NRULE_0033) | Multicomponent monooxygenase effector protein | |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | ROP_71710 ROP_06010 ROP_08600 ROP_14870 ROP_14890 ROP_17790 ROP_18030 ROP_20980 ROP_22170 ROP_24850 ROP_25670 ROP_28570 ROP_31670 ROP_38640 ROP_39230 ROP_40940 ROP_42780 ROP_42810 ROP_43970 ROP_44530 ROP_46320 ROP_46340 ROP_53630 ROP_58730 ROP_70810 ROP_pROB02-01580 ROP_pROB02-01600 ROP_pROB02-02050 |
| FADR1 (NRULE_0101) | NADH-dependent flavin reductase | ROP_33700 ROP_22400 ROP_25720 ROP_31700 ROP_33000 ROP_33620 ROP_20930 ROP_16720 ROP_14560 ROP_14290 ROP_13730 ROP_37400 ROP_pROB02-01940 ROP_71800 ROP_58570 ROP_53460 ROP_46610 ROP_46230 ROP_44570 ROP_43020 ROP_22110 |
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014) |
必須 | A | PCAG (NRULE_0066) | Protocatechuate 3,4-dioxygenase alpha subunit | ROP_10520 ROP_10510 |
PCAH (NRULE_0067) | Protocatechuate 3,4-dioxygenase beta subunit | ROP_10510 |
PCAB (NRULE_0068) | 3-carboxy-cis,cis-muconate cycloisomerase | ROP_10530 |
PCAC (NRULE_0069) | 4-carboxymuconolactone decarboxylase | ROP_10540 |
PCAD (NRULE_0070) | 3-oxoadipate enol-lactonase | ROP_10540 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | ROP_10500 ROP_37640 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | ROP_10490 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | ROP_25860 ROP_27210 ROP_10560 ROP_22440 |
B | PCAG (NRULE_0066) | Protocatechuate 3,4-dioxygenase alpha subunit | ROP_10520 ROP_10510 |
PCAH (NRULE_0067) | Protocatechuate 3,4-dioxygenase beta subunit | ROP_10510 |
PCAB (NRULE_0068) | 3-carboxy-cis,cis-muconate cycloisomerase | ROP_10530 |
PCAL (NRULE_0071) | 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase | ROP_10540 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | ROP_37640 ROP_10500 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | ROP_10490 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | ROP_10560 ROP_27210 ROP_25860 ROP_22440 |
Riboflavin biosynthesis(NFUNC_0058) |
必須 | A | RIBB (NRULE_0200) | 3,4-dihydroxy-2-butanone 4-phosphate synthase | ROP_33730 ROP_46600 ROP_33020 ROP_69510 ROP_46240 |
RIBA (NRULE_0201) | GTP cyclohydrolase-2 | ROP_03890 ROP_13740 ROP_33730 ROP_46600 ROP_69510 |
RIBD (NRULE_0202) | Riboflavin biosynthesis protein RibD | |
RIBH (NRULE_0203) | 6,7-dimethyl-8-ribityllumazine synthase | ROP_69520 ROP_13280 |
RIBE (NRULE_0204) | Riboflavin synthase | ROP_69500 |
任意 | | RIBF (NRULE_0205) | Riboflavin biosynthesis protein RibF | ROP_66920 |
Streptogramin resistance(NFUNC_0027) |
必須 | A | VAT (NRULE_0113) | Streptogramin A acetyltransferase | |
B | VGB (NRULE_0114) | Virginiamycin B lyase | ROP_25930 |
Thiocyanate hydrolase(NFUNC_0003) |
必須 | A | SCNA (NRULE_0003) | Thiocyanate hydrolase subunit alpha | ROP_43460 ROP_43450 |
SCNB (NRULE_0004) | Thiocyanate hydrolase subunit beta | ROP_43450 ROP_43460 |
SCNC (NRULE_0005) | Thiocyanate hydrolase subunit gamma | ROP_43440 |
B | SCNA (NRULE_0003) | Thiocyanate hydrolase subunit alpha | ROP_43450 ROP_43460 |
SCNC (NRULE_0005) | Thiocyanate hydrolase subunit gamma | ROP_43440 |
C | SCNB (NRULE_0004) | Thiocyanate hydrolase subunit beta | ROP_43450 ROP_43460 |
SCNC (NRULE_0005) | Thiocyanate hydrolase subunit gamma | ROP_43440 |
Toluene degradation (conversion into benzoate)(NFUNC_0009) |
必須 | A | XYLA (NRULE_0025) | Xylene monooxygenase electron transfer component | |
XYLM (NRULE_0026) | Xylene monooxygenase | |
BADH (NRULE_0042) | Aryl-alcohol dehydrogenase | ROP_45670 ROP_46940 |
BZDH1 (NRULE_0043) | Benzaldehyde dehydrogenase | |
B | XYLA (NRULE_0025) | Xylene monooxygenase electron transfer component | |
XYLM (NRULE_0026) | Xylene monooxygenase | |
BADH (NRULE_0042) | Aryl-alcohol dehydrogenase | ROP_45670 ROP_46940 |
BZDH2 (NRULE_0381) | NAD(P)-dependent benzaldehyde dehydrogenase | |
Toluene degradation (conversion into protocatechuate via p-cresol)(NFUNC_0007) |
必須 | A | MMA (NRULE_0027) | Multicomponent monooxygenase alpha subunit | |
MMB (NRULE_0028) | Multicomponent monooxygenase beta subunit | |
FDR1 (NRULE_0032) | Oxygenase electron transfer component | ROP_26720 ROP_pROB02-00900 ROP_63950 ROP_61150 ROP_58950 ROP_53850 ROP_52840 ROP_40920 ROP_38620 ROP_37440 ROP_34890 ROP_30070 ROP_28620 ROP_25780 ROP_25700 ROP_25470 ROP_24410 ROP_21000 ROP_20970 ROP_17720 ROP_11200 |
MME (NRULE_0033) | Multicomponent monooxygenase effector protein | |
PCHF (NRULE_0035) | 4-cresol dehydrogenase flavoprotein subunit | |
PCHC (NRULE_0036) | 4-cresol dehydrogenase cytochrome c subunit | |
PCHA (NRULE_0037) | p-hydroxybenzaldehyde dehydrogenase | |
POBA (NRULE_0038) | p-hydroxybenzoate hydroxylase | |
任意 | | MMG1 (NRULE_0029) | Multicomponent monooxygenase gamma subunit | |
| MMG2 (NRULE_0030) | Multicomponent monooxygenase gamma subunit | |
| MMG3 (NRULE_0031) | Multicomponent monooxygenase gamma subunit | |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | ROP_38640 ROP_39230 ROP_40940 ROP_42780 ROP_42810 ROP_43970 ROP_44530 ROP_08600 ROP_14870 ROP_14890 ROP_17790 ROP_18030 ROP_20980 ROP_22170 ROP_24850 ROP_25670 ROP_28570 ROP_31670 ROP_pROB02-02050 ROP_pROB02-01600 ROP_pROB02-01580 ROP_71710 ROP_70810 ROP_58730 ROP_53630 ROP_46340 ROP_46320 ROP_06010 |
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037) |
必須 | A | TREY (NRULE_0140) | Maltooligosyl trehalose synthase | ROP_07850 |
TREZ (NRULE_0141) | Malto-oligosyltrehalose trehalohydrolase | ROP_07900 |
任意 | | GLGX (NRULE_0139) | Glycogen debranching enzyme | ROP_65030 ROP_07840 |
Trehalose biosynthesis (from maltose)(NFUNC_0034) |
必須 | A | MAPA (NRULE_0126) | Maltose phosphorylase | |
TREP (NRULE_0127) | Alpha,alpha-trehalose phosphorylase | ROP_54720 |
B | TRES (NRULE_0128) | Trehalose synthase | ROP_61000 |
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031) |
必須 | A | TPS (NRULE_0119) | Trehalose-phosphate synthase | ROP_02140 ROP_48060 |
TPP (NRULE_0120) | Trehalose-6-phosphate phosphatase | ROP_44090 |
Uptake of osmoprotectant(NFUNC_0061) |
必須 | A | OPUAC (NRULE_0213) | Osmoprotectant ABC transporter substrate-binding protein | |
OPUAB (NRULE_0214) | Osmoprotectant ABC transporter permease protein | |
OPUAA (NRULE_0215) | Osmoprotectant ABC transporter ATP-binding protein | |
B | EHUB (NRULE_0216) | Ectoine ABC transporter substrate-binding protein | ROP_42670 |
EHUC (NRULE_0217) | Ectoine ABC transporter permease protein | ROP_42680 |
EHUD (NRULE_0218) | Ectoine ABC transporter permease protein | ROP_42690 |
EHUA (NRULE_0219) | Ectoine ABC transporter ATP-binding protein | ROP_42700 |
C | BCCT (NRULE_0220) | BCCT family transporter | ROP_57210 ROP_14860 |
D | PROP (NRULE_0221) | Osmoprotectant transporter | |
E | OPUE (NRULE_0222) | Sodium/proline symporter | |
F | TEAA (NRULE_0223) | TRAP transporter substrate-binding protein TeaA | |
TEAB (NRULE_0224) | TRAP transporter small transmembrane protein TeaB | |
TEAC (NRULE_0225) | TRAP transporter large transmembrane protein TeaC | |
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060) |
必須 | A | EPD (NRULE_0208) | D-erythrose-4-phosphate dehydrogenase | |
PDXB (NRULE_0209) | Erythronate-4-phosphate dehydrogenase | |
SERC (NRULE_0210) | Phosphoserine aminotransferase | ROP_50530 |
PDXA (NRULE_0211) | 4-hydroxythreonine-4-phosphate dehydrogenase | ROP_47110 |
PDXJ (NRULE_0212) | Pyridoxine 5'-phosphate synthase | |
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059) |
必須 | A | PDXS (NRULE_0206) | Pyridoxal biosynthesis lyase PdxS | ROP_68630 |
PDXT (NRULE_0207) | Glutamine amidotransferase subunit PdxT | ROP_68670 |