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推定保有機能 : Amycolatopsis mediterranei

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タイプパターン 構成遺伝子 該当CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseRAM_45505
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporter
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseRAM_03780
Alginate degradation(NFUNC_0062)
必須A
ALGL
(NRULE_0226)
Alginate lyase
B
ALY
(NRULE_0227)
Alginate lyaseRAM_20915
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseRAM_32810
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRAM_22025 RAM_22015
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRAM_22025 RAM_22015
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRAM_12795 RAM_07965 RAM_10140 RAM_19825 RAM_20960 RAM_22020 RAM_34595
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRAM_22030
任意 
RUBA
(NRULE_0039)
RubredoxinRAM_32810
 
RUBB
(NRULE_0040)
Rubredoxin reductase
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunit
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRAM_41075 RAM_12805 RAM_11215 RAM_38855 RAM_20970 RAM_21425 RAM_21860 RAM_19150 RAM_13875 RAM_25905 RAM_29205 RAM_38825 RAM_20810
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseRAM_23140
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseRAM_23750 RAM_05460
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferase
C
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinase
D
HPH
(NRULE_0174)
Hygromycin-B 4-O-kinase
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ARAM_26100 RAM_18065
任意 
BLAB
(NRULE_0123)
Metallo-beta-lactamase
 
BLAD
(NRULE_0125)
Beta-lactamase class D
Aniline degradation (conversion into catechol)(NFUNC_0075)
必須A
ATDA1
(NRULE_0240)
Gamma-glutamylanilide synthetase
ATDA3
(NRULE_0357)
Aniline dioxygenase large subunit
ATDA4
(NRULE_0358)
Aniline dioxygenase small subunit
任意 
ATDA2
(NRULE_0241)
Putative gamma-glutamylanilide hydrolase
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRAM_10140 RAM_19825 RAM_20960 RAM_22020 RAM_34595 RAM_07965 RAM_12795
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRAM_11215 RAM_12805 RAM_13875 RAM_19150 RAM_20810 RAM_20970 RAM_21425 RAM_21860 RAM_25905 RAM_29205 RAM_38825 RAM_38855 RAM_41075
 
FDR2
(NRULE_0057)
Ferredoxin reductaseRAM_22320 RAM_09290 RAM_02005
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseRAM_00235
TRPE
(NRULE_0143)
Anthranilate synthase component IRAM_11665
Anthranilate degradation (via hydroxylation)(NFUNC_0018)
必須A
ANTA
(NRULE_0044)
Anthranilate 1,2-dioxygenase large subunit
ANTB
(NRULE_0045)
Anthranilate 1,2-dioxygenase small subunit
任意 
ANTC
(NRULE_0081)
Anthranilate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRAM_07965 RAM_34595 RAM_22020 RAM_20960 RAM_19825 RAM_12795 RAM_10140
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRAM_20970 RAM_20810 RAM_19150 RAM_13875 RAM_12805 RAM_11215 RAM_41075 RAM_38855 RAM_38825 RAM_29205 RAM_25905 RAM_21860 RAM_21425
 
FDR2
(NRULE_0057)
Ferredoxin reductaseRAM_09290 RAM_02005 RAM_22320
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseRAM_30070 RAM_24775
B
AZR
(NRULE_0237)
NADPH azoreductase
C
AZOB
(NRULE_0238)
NAD(P)H azoreductase
Aromatic hydrocarbon degradation (via hydroxylation by dioxygenase)(NFUNC_0016)
必須A
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitRAM_38825
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunitRAM_37080 RAM_36650
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRAM_22020 RAM_19825 RAM_12795 RAM_34595 RAM_10140 RAM_07965 RAM_20960
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRAM_20970 RAM_41075 RAM_21425 RAM_21860 RAM_25905 RAM_29205 RAM_38825 RAM_38855 RAM_13875 RAM_12805 RAM_11215 RAM_19150 RAM_20810
 
FDR2
(NRULE_0057)
Ferredoxin reductaseRAM_09290 RAM_22320 RAM_02005
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC1
(NRULE_0017)
Arsenate reductase
B
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC2
(NRULE_0018)
Arsenate reductase
C
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC3
(NRULE_0019)
Arsenate reductase
D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRAM_03870
ARSC1
(NRULE_0017)
Arsenate reductase
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRAM_03870
ARSC2
(NRULE_0018)
Arsenate reductase
F
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRAM_03870
ARSC3
(NRULE_0019)
Arsenate reductase
任意 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseRAM_12455
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsD
 
ARSH
(NRULE_0021)
ArsH protein
Artificial lacto-N-biose biosynthesis(NFUNC_0026)
必須A
SP
(NRULE_0109)
Sucrose phosphorylase
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferaseRAM_42780
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseRAM_12280
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRAM_33320 RAM_06125 RAM_23605
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunit
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunit
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRAM_22020 RAM_34595 RAM_12795 RAM_10140 RAM_07965 RAM_19825 RAM_20960
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRAM_41075 RAM_11215 RAM_12805 RAM_13875 RAM_19150 RAM_20810 RAM_20970 RAM_21425 RAM_21860 RAM_25905 RAM_29205 RAM_38825 RAM_38855
 
FDR2
(NRULE_0057)
Ferredoxin reductaseRAM_09290 RAM_02005 RAM_22320
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ARAM_26100 RAM_18065
B
BLAB
(NRULE_0123)
Metallo-beta-lactamase
C
BLAC
(NRULE_0124)
Beta-lactamase class C
D
BLAD
(NRULE_0125)
Beta-lactamase class D
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseRAM_38845
B
GBSB
(NRULE_0176)
Alcohol dehydrogenase
BETB
(NRULE_0177)
Betaine aldehyde dehydrogenaseRAM_13295 RAM_38835
C
CHOX
(NRULE_0178)
Choline oxidase
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymerase
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseRAM_30165 RAM_19035 RAM_20645 RAM_38340 RAM_30505
C
PHAZ3
(NRULE_0088)
Poly(3-hydroxyalkanoate) depolymeraseRAM_33175
任意 
PHAY
(NRULE_0022)
D-(-)-3-hydroxybutyrate oligomer hydrolase
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthase
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseRAM_11275
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDRAM_11290
BIOB
(NRULE_0185)
Biotin synthaseRAM_11295
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRAM_09450
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRAM_09435
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRAM_09450
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRAM_09435
CATB1
(NRULE_0386)
Muconate cycloisomerase
C
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRAM_09435
CATB1
(NRULE_0386)
Muconate cycloisomerase
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRAM_09435
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class C
任意 
BLAA
(NRULE_0122)
Beta-lactamase class ARAM_26100 RAM_18065
 
BLAB
(NRULE_0123)
Metallo-beta-lactamase
Chlorocatechol degradation (beta-ketoadipate pathway)(NFUNC_0104)
必須A
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRAM_09435
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseRAM_23685 RAM_46980 RAM_44510 RAM_42000 RAM_38505 RAM_35915 RAM_31315 RAM_31305 RAM_25505 RAM_19995 RAM_18735 RAM_17630 RAM_12970 RAM_01380
CLCE
(NRULE_0384)
Maleylacetate reductaseRAM_30720
CLCB
(NRULE_0387)
Chloromuconate cycloisomerase
B
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRAM_09435
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseRAM_46980 RAM_31315 RAM_35915 RAM_38505 RAM_42000 RAM_44510 RAM_01380 RAM_12970 RAM_17630 RAM_18735 RAM_19995 RAM_23685 RAM_25505 RAM_31305
CLCE
(NRULE_0384)
Maleylacetate reductaseRAM_30720
任意 
CLCF
(NRULE_0385)
Chloromuconolactone dehalogenase
Dibenzothiophene degradation (via desulfurization)(NFUNC_0029)
必須A
DSZA
(NRULE_0103)
Dibenzothiophene-5,5-dioxide monooxygenaseRAM_36630
DSZB
(NRULE_0104)
2'-hydroxybiphenyl-2-sulfinate desulfinase
DSZC
(NRULE_0105)
Dibenzothiophene monooxygenase
任意 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRAM_36620 RAM_36915 RAM_35210 RAM_26705 RAM_12835
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
必須A
EDIO
(NRULE_0058)
extradiol dioxygenaseRAM_07415 RAM_12830 RAM_29140 RAM_47725
METAH
(NRULE_0059)
meta-cleavage compound hydrolase
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydratase
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseRAM_21495
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseRAM_21490
B
EDIO
(NRULE_0058)
extradiol dioxygenaseRAM_29140 RAM_07415 RAM_12830 RAM_47725
2HMSD
(NRULE_0060)
2-hydroxymuconic semialdehyde dehydrogenase
4OT
(NRULE_0061)
4-oxalocrotonate tautomerase
4OD
(NRULE_0062)
4-oxalocrotonate decarboxylase
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydratase
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseRAM_21495
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseRAM_21490
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseRAM_44120
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseRAM_44125
ECTC
(NRULE_0188)
L-ectoine synthaseRAM_44115
Folate biosynthesis(NFUNC_0044)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseRAM_00235
DHPS
(NRULE_0144)
Dihydropteroate synthaseRAM_19760 RAM_37020 RAM_44875 RAM_06870
FOLM
(NRULE_0146)
Dihydrofolate reductase FolM
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseRAM_44870
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseRAM_44865
FOLC
(NRULE_0160)
Bifunctional protein FolCRAM_34460
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IRAM_42400
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseRAM_00235
DHPS
(NRULE_0144)
Dihydropteroate synthaseRAM_37020 RAM_06870 RAM_19760 RAM_44875
FOLA
(NRULE_0147)
Dihydrofolate reductaseRAM_20935
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseRAM_44870
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseRAM_44865
FOLC
(NRULE_0160)
Bifunctional protein FolCRAM_34460
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IRAM_42400
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
C
GLAT
(NRULE_0142)
Glutamine amidotransferaseRAM_00235
DHPS
(NRULE_0144)
Dihydropteroate synthaseRAM_37020 RAM_06870 RAM_19760 RAM_44875
DFR2
(NRULE_0148)
Dihydrofolate reductase type 2
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseRAM_44870
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseRAM_44865
FOLC
(NRULE_0160)
Bifunctional protein FolCRAM_34460
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IRAM_42400
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseRAM_45505
Haloalkane degradation (conversion into hydroxyacid)(NFUNC_0010)
必須A
DHAA
(NRULE_0050)
Haloalkane dehalogenase
HAD
(NRULE_0051)
(S)-2-haloacid dehalogenaseRAM_28665
B
DHAA
(NRULE_0050)
Haloalkane dehalogenase
DEH
(NRULE_0075)
Haloacetate dehalogenase
Human milk oligosaccharides metabolism(NFUNC_0083)
必須A
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
任意 
NAHK
(NRULE_0256)
N-acetylhexosamine 1-kinase
 
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferaseRAM_42780
 
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseRAM_12280
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseRAM_44110
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseRAM_44120
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseRAM_44125
 
ECTC
(NRULE_0188)
L-ectoine synthaseRAM_44115
4-hydroxyphenylacetate degradation(NFUNC_0068)
必須A
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
B
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRAM_36915 RAM_35210 RAM_26705 RAM_12835 RAM_36620
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
D
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRAM_36620 RAM_36915 RAM_35210 RAM_26705 RAM_12835
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
E
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRAM_36915 RAM_12835 RAM_26705 RAM_35210 RAM_36620
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
F
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRAM_12835 RAM_36620 RAM_35210 RAM_26705 RAM_36915
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
G
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
H
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
Macrolide antibiotic resistance(NFUNC_0045)
必須A
ERM
(NRULE_0164)
rRNA adenine N-6-methyltransferase
B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferase
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacA
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacB
D
ERE
(NRULE_0168)
Erythromycin esteraseRAM_44465 RAM_08915
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferase
F
MGT
(NRULE_0170)
Macrolide glycosyltransferase
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRAM_03775 RAM_43700 RAM_43685
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulator
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRAM_43695 RAM_22215 RAM_20560 RAM_29490 RAM_41060
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntR
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueR
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRRAM_11515 RAM_15305
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntR
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikR
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscR
J
SMTA
(NRULE_0009)
Metallothionein
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRAM_41060 RAM_43695 RAM_29490 RAM_22215 RAM_20560
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulator
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRAM_43690
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding protein
Mycosamine biosynthesis(NFUNC_0095)
必須A
AMPHDII
(NRULE_0342)
GDP-3-keto-6-deoxy-D-mannose C-3 aminotransferase
GMD
(NRULE_0343)
GDP-mannose 4,6-dehydrataseRAM_00585
任意 
AMPHDI
(NRULE_0341)
GDP-mycosamine glycosyltransferase
Naphthalene degradation (via hydroxylation by dioxygenase)(NFUNC_0067)
必須A
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitRAM_38825
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunitRAM_36650 RAM_37080
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenaseRAM_07415 RAM_12830 RAM_47725 RAM_29140
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAHG
(NRULE_0190)
Salicylate hydroxylase
B
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitRAM_38825
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunitRAM_36650 RAM_37080
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenaseRAM_47725 RAM_12830 RAM_29140 RAM_07415
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAGG
(NRULE_0191)
Salicylate 5-hydroxylase alpha subunit
NAGH
(NRULE_0192)
Salicylate 5-hydroxylase beta subunit
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRAM_22020 RAM_20960 RAM_19825 RAM_12795 RAM_10140 RAM_07965 RAM_34595
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRAM_38825 RAM_11215 RAM_12805 RAM_13875 RAM_19150 RAM_20810 RAM_20970 RAM_21425 RAM_21860 RAM_25905 RAM_29205 RAM_38855 RAM_41075
 
FDR2
(NRULE_0057)
Ferredoxin reductaseRAM_02005 RAM_22320 RAM_09290
Nitrile hydratase(NFUNC_0002)
必須A
NHAA
(NRULE_0001)
Nitrile hydratase subunit alpha
NHAB
(NRULE_0002)
Nitrile hydratase subunit beta
任意 
P14K
(NRULE_0006)
Nitrile hydratase activator P14K
 
COBW
(NRULE_0007)
CobW/P47K family proteinRAM_21155
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseRAM_44830 RAM_25625
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseRAM_06135
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseRAM_23300 RAM_37340
PANC
(NRULE_0118)
Pantothenate synthetaseRAM_44835
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ARAM_18065 RAM_26100
B
BLAD
(NRULE_0125)
Beta-lactamase class D
任意 
BLAB
(NRULE_0123)
Metallo-beta-lactamase
Phenol degradation(NFUNC_0028)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRAM_22025 RAM_22015
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRAM_22025 RAM_22015
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylase
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseRAM_30725
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseRAM_02005 RAM_09290 RAM_22320
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRAM_07965 RAM_22020 RAM_20960 RAM_19825 RAM_12795 RAM_10140 RAM_34595
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRAM_22030
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRAM_12805 RAM_19150 RAM_29205 RAM_25905 RAM_21860 RAM_13875 RAM_11215 RAM_21425 RAM_20970 RAM_20810 RAM_41075 RAM_38855 RAM_38825
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRAM_35210 RAM_26705 RAM_12835 RAM_36915 RAM_36620
Phytic acid hydrolysis(NFUNC_0085)
必須A
PHYT
(NRULE_0258)
3-phytaseRAM_11615
B
APPA
(NRULE_0259)
Periplasmic AppA protein
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRAM_09445
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRAM_09440
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomerase
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseRAM_09455
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRAM_09450
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRAM_09435
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRAM_09445
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRAM_09440
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRAM_09435
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
必須A
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseRAM_40415
任意 
PQQA
(NRULE_0090)
Coenzyme PQQ synthesis protein A
 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BRAM_40430
 
PQQD
(NRULE_0093)
Coenzyme PQQ synthesis protein D
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ERAM_40425
 
PQQF
(NRULE_0095)
Coenzyme PQQ synthesis protein F
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseRAM_14095
RIBA
(NRULE_0201)
GTP cyclohydrolase-2RAM_16985 RAM_42865 RAM_26775 RAM_46635 RAM_14095
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibD
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseRAM_14100
RIBE
(NRULE_0204)
Riboflavin synthaseRAM_14090
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFRAM_32420
Streptomycin resistance(NFUNC_0054)
必須A
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferase
B
ANT3
(NRULE_0154)
Streptomycin 3''-adenylyltransferase
C
APH6
(NRULE_0155)
Streptomycin 6-kinaseRAM_05460 RAM_23750
任意 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferase
Toluene degradation (conversion into benzoate)(NFUNC_0009)
必須A
XYLA
(NRULE_0025)
Xylene monooxygenase electron transfer component
XYLM
(NRULE_0026)
Xylene monooxygenase
BADH
(NRULE_0042)
Aryl-alcohol dehydrogenase
BZDH1
(NRULE_0043)
Benzaldehyde dehydrogenaseRAM_33675
B
XYLA
(NRULE_0025)
Xylene monooxygenase electron transfer component
XYLM
(NRULE_0026)
Xylene monooxygenase
BADH
(NRULE_0042)
Aryl-alcohol dehydrogenase
BZDH2
(NRULE_0381)
NAD(P)-dependent benzaldehyde dehydrogenase
Toluene degradation (conversion into protocatechuate via p-cresol)(NFUNC_0007)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRAM_22015 RAM_22025
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRAM_22025 RAM_22015
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRAM_10140 RAM_34595 RAM_22020 RAM_20960 RAM_19825 RAM_12795 RAM_07965
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRAM_22030
PCHF
(NRULE_0035)
4-cresol dehydrogenase flavoprotein subunit
PCHC
(NRULE_0036)
4-cresol dehydrogenase cytochrome c subunit
PCHA
(NRULE_0037)
p-hydroxybenzaldehyde dehydrogenase
POBA
(NRULE_0038)
p-hydroxybenzoate hydroxylase
任意 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunit
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRAM_21860 RAM_25905 RAM_29205 RAM_38825 RAM_38855 RAM_41075 RAM_11215 RAM_12805 RAM_13875 RAM_19150 RAM_20810 RAM_20970 RAM_21425
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseRAM_13175
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseRAM_13180
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeRAM_13170 RAM_15565 RAM_13185
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須A
MAPA
(NRULE_0126)
Maltose phosphorylase
TREP
(NRULE_0127)
Alpha,alpha-trehalose phosphorylase
B
TRES
(NRULE_0128)
Trehalose synthaseRAM_13195
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseRAM_44490
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseRAM_44495
Vancomycin resistance (via D-Ala-D-Lac precursor)(NFUNC_0089)
必須A
VANA
(NRULE_0265)
D-alanine--D-lactate ligaseRAM_42565
VANH
(NRULE_0266)
D-specific alpha-keto acid dehydrogenaseRAM_42570
VANX
(NRULE_0267)
D-alanyl-D-alanine dipeptidaseRAM_42560
任意 
VANYA
(NRULE_0274)
D-alanyl-D-alanine carboxypeptidase
 
VANYB
(NRULE_0275)
D-alanyl-D-alanine carboxypeptidase
 
VANYD
(NRULE_0276)
D-alanyl-D-alanine carboxypeptidase
 
VANY
(NRULE_0277)
D-alanyl-D-alanine carboxypeptidase
 
VANYN
(NRULE_0278)
D-alanyl-D-alanine dipeptidase/D-alanyl-D-alanine carboxypeptidase
 
VANRA
(NRULE_0279)
Two-component system response regulator VanR
 
VANRB
(NRULE_0280)
Two-component system response regulator VanR
 
VANRD
(NRULE_0282)
Putative two-component system response regulator VanR
 
VANR
(NRULE_0284)
Two-component system response regulator VanRRAM_42550
 
VANSA
(NRULE_0285)
Two-component system histidine kinase VanS
 
VANSB
(NRULE_0286)
Two-component system histidine kinase VanS
 
VANSD
(NRULE_0288)
Putative two-component system histidine kinase VanS
 
VANSM
(NRULE_0289)
Putative two-component system histidine kinase VanS
 
VANS
(NRULE_0290)
Two-component system histidine kinase VanSRAM_42555 RAM_41825
 
VANZ
(NRULE_0291)
Teicoplanin resistance protein
 
VANW
(NRULE_0292)
Putative vancomycin resistance protein
 
VANJ
(NRULE_0295)
Teicoplanin resistance protein
 
VANK
(NRULE_0296)
Glycyltransferase VanK
 
MURF2
(NRULE_0297)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-lactate ligase
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenase
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenase
SERC
(NRULE_0210)
Phosphoserine aminotransferaseRAM_43430
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseRAM_11905
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthase
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSRAM_27070
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTRAM_27025